General information for g2429.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Y+L amino acid transporter 2.
Parent gene
- The parent gene g2429 is located on chr_3: 17933142..17936907 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2429 | g2429.t1 | TTS | g2429.t1 | 17932493 | 17932493 |
| chr_3 | g2429 | g2429.t1 | isoform | g2429.t1 | 17933142 | 17936907 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon1 | 17933142 | 17933144 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS1 | 17933142 | 17933144 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon2 | 17933603 | 17933661 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS2 | 17933603 | 17933661 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon3 | 17933753 | 17933970 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS3 | 17933753 | 17933970 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon4 | 17934035 | 17934138 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS4 | 17934035 | 17934138 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon5 | 17934206 | 17934366 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS5 | 17934206 | 17934366 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon6 | 17935098 | 17935199 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS6 | 17935098 | 17935199 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon7 | 17935284 | 17935396 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS7 | 17935284 | 17935396 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon8 | 17935458 | 17935551 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS8 | 17935458 | 17935551 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon9 | 17935622 | 17935747 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS9 | 17935622 | 17935747 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon10 | 17935809 | 17935883 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS10 | 17935809 | 17935883 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon11 | 17935962 | 17936113 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS11 | 17935962 | 17936113 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon12 | 17936199 | 17936218 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS12 | 17936199 | 17936218 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon13 | 17936407 | 17936477 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS13 | 17936407 | 17936477 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon14 | 17936554 | 17936580 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS14 | 17936554 | 17936580 |
| chr_3 | g2429 | g2429.t1 | exon | g2429.t1.exon15 | 17936739 | 17936907 |
| chr_3 | g2429 | g2429.t1 | cds | g2429.t1.CDS15 | 17936739 | 17936907 |
| chr_3 | g2429 | g2429.t1 | TSS | g2429.t1 | 17937401 | 17937401 |
Sequences
>g2429.t1 Gene=g2429 Length=1494
ATGGCTGACGAGAATAAGCCTTTATCGCGAAAATCATCGAATGCTAAAGATGTCATTAAT
AATAATAACGAAAATGGTGCTGCAGAAGGTGAAGGAGGTGGTGAAGTAACATTGAAAGCT
AAAATGAGCTTAGTAAATGGCTGTACAGTGATTATTGGATCGATTATAGGTTCAGGCATT
TTCGTTTCACCAACAGGAGTTCTTAAATATACTGGCTCAGTTAATATGGCTTTAATCGTT
TGGATAACTTCGGGACTTTTCTCAATGGTTGGCGCGTACTGCTACAGTGAGTTGGGAACA
ATGATTAAGAAAAGTGGCGCTGATTATGCCTATATTATGACTACTTTTGGGCCATTCTTG
GCTTTCATAAGACTTTGGATTGAATGCATGATTGTAAGGCCTTGTTCACAAGCCATCGTT
GCATTAACATTTAGTGTTTACGTTTTAAAACCGTTTTTCCCTGAATGCGACCCACCAAAT
GATGCTGCTCGTATGCTAGCTGTCTGTTGTATTTTATTATTGACATTTGTCAATTGTTAT
TCCGTCAAATGGGCAACTGCAGTTCAGGATACATTCACATATGCAAAACTCATTGCACTC
TTCATTATCATTGCATTTGGAGTGTATCTTTTGTCAATGGGCAATGTTCAGTATTTTAAT
TTTGATGATACAAAAACTGAGGTTACAAGTTTAGCGTTATCTTTTTATTCGGGTCTTTTT
GCATATAACGGATGGAATTATTTAAATTTCATCATTGAGGAACTTAAAGATCCTGTCAAG
AATTTACCCAGAGCCATTGCTATTTCGTGTACTCTGGTAACAGTCGTATACGTTTTAACC
AATATTTCTTTCTACACAATTCTTTCACCCATTGAAGTATTAGGGTCTGAGGCCGTAGCT
GTTACTTTTGCGAATAAAGCCTTTAGGAGCTTCGCATTTTTCATTCCTATTTTTGTTGCT
ATGTCAACTTTTGGCGCGGTAAACGGTATTTTGCTAACATCGTCTAGACTGTTTTATGCC
GGCGCATGTGAGGGGCAGATGCCGGAAATTCTCACCATGATTCAAATTCAGAGATTAACA
CCAACTCCTGCTGTTTTAGCAATTTCATTTTTGTCAATGGCTTATCTCTGTGTATCAGAT
ATTTACGCATTGATTAATTATGTTGGTTTTGCTACTTGGCTCTCAATTGGAGCATCAGTC
TTGTGTTTACCATGGCTTCGTTACACACAACCTAATCTTGTTCGTCCAATTAAAGTAAAT
CTATTCTGGCCGATACTTTATCTCTTGGCAACTATCTTTGTCACTGTCGTTCCTATGTAT
GCAAGTCCCCTCGAGACAGGTTATGGATGTCTTATGATTCTCACGAGTGTTCCCGTTTAT
TTCTTGTTCATTGCATGGAAAAATAAGCCAAAGTCATTCCAAAATGCTATGGGAGCTTTA
ACGCAAAAATTGCAAAAAATGTTGATGGTCGTTCGTGGAAAGTCGCAGCAGTAA
>g2429.t1 Gene=g2429 Length=497
MADENKPLSRKSSNAKDVINNNNENGAAEGEGGGEVTLKAKMSLVNGCTVIIGSIIGSGI
FVSPTGVLKYTGSVNMALIVWITSGLFSMVGAYCYSELGTMIKKSGADYAYIMTTFGPFL
AFIRLWIECMIVRPCSQAIVALTFSVYVLKPFFPECDPPNDAARMLAVCCILLLTFVNCY
SVKWATAVQDTFTYAKLIALFIIIAFGVYLLSMGNVQYFNFDDTKTEVTSLALSFYSGLF
AYNGWNYLNFIIEELKDPVKNLPRAIAISCTLVTVVYVLTNISFYTILSPIEVLGSEAVA
VTFANKAFRSFAFFIPIFVAMSTFGAVNGILLTSSRLFYAGACEGQMPEILTMIQIQRLT
PTPAVLAISFLSMAYLCVSDIYALINYVGFATWLSIGASVLCLPWLRYTQPNLVRPIKVN
LFWPILYLLATIFVTVVPMYASPLETGYGCLMILTSVPVYFLFIAWKNKPKSFQNAMGAL
TQKLQKMLMVVRGKSQQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g2429.t1 | Gene3D | G3DSA:1.20.1740.10 | - | 37 | 488 | 7.6E-84 |
| 2 | g2429.t1 | PANTHER | PTHR11785 | AMINO ACID TRANSPORTER | 16 | 491 | 9.3E-252 |
| 3 | g2429.t1 | PANTHER | PTHR11785:SF526 | AMINO ACID TRANSPORTER | 16 | 491 | 9.3E-252 |
| 42 | g2429.t1 | PIRSF | PIRSF006060 | AA_transporter | 22 | 482 | 6.5E-70 |
| 1 | g2429.t1 | Pfam | PF13520 | Amino acid permease | 44 | 440 | 7.5E-51 |
| 23 | g2429.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 43 | - |
| 41 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 44 | 62 | - |
| 28 | g2429.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 63 | 73 | - |
| 30 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 95 | - |
| 21 | g2429.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 96 | 106 | - |
| 34 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 107 | 127 | - |
| 24 | g2429.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 128 | 161 | - |
| 35 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 162 | 182 | - |
| 19 | g2429.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 183 | 193 | - |
| 36 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 194 | 211 | - |
| 27 | g2429.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 212 | 230 | - |
| 31 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 231 | 252 | - |
| 20 | g2429.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 253 | 263 | - |
| 33 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 264 | 288 | - |
| 25 | g2429.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 289 | 307 | - |
| 37 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 308 | 331 | - |
| 17 | g2429.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 332 | 363 | - |
| 39 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 364 | 385 | - |
| 29 | g2429.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 386 | 390 | - |
| 38 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 391 | 409 | - |
| 18 | g2429.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 410 | 420 | - |
| 40 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 421 | 440 | - |
| 26 | g2429.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 441 | 445 | - |
| 32 | g2429.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 446 | 466 | - |
| 22 | g2429.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 467 | 497 | - |
| 7 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 43 | 62 | - |
| 12 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 77 | 96 | - |
| 5 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 109 | 127 | - |
| 11 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 162 | 184 | - |
| 6 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 197 | 219 | - |
| 15 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 230 | 252 | - |
| 14 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 265 | 287 | - |
| 13 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 310 | 332 | - |
| 9 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 363 | 385 | - |
| 8 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 389 | 406 | - |
| 4 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 419 | 441 | - |
| 10 | g2429.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 446 | 465 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13781 (solute carrier family 7 (L-type amino acid transporter), member 8)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
