General information for g2505.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Modifier of mdg4.
Parent gene
- The parent gene g2505 is located on chr_3: 18328646..18333574 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2505 | g2505.t1 | TTS | g2505.t1 | 18321778 | 18321778 |
| chr_3 | g2505 | g2505.t1 | isoform | g2505.t1 | 18322458 | 18328646 |
| chr_3 | g2505 | g2505.t1 | exon | g2505.t1.exon1 | 18322458 | 18322606 |
| chr_3 | g2505 | g2505.t1 | cds | g2505.t1.CDS1 | 18322458 | 18322606 |
| chr_3 | g2505 | g2505.t1 | exon | g2505.t1.exon2 | 18322664 | 18322882 |
| chr_3 | g2505 | g2505.t1 | cds | g2505.t1.CDS2 | 18322664 | 18322882 |
| chr_3 | g2505 | g2505.t1 | exon | g2505.t1.exon3 | 18325445 | 18326051 |
| chr_3 | g2505 | g2505.t1 | cds | g2505.t1.CDS3 | 18325445 | 18326051 |
| chr_3 | g2505 | g2505.t1 | exon | g2505.t1.exon4 | 18326119 | 18326529 |
| chr_3 | g2505 | g2505.t1 | cds | g2505.t1.CDS4 | 18326119 | 18326529 |
| chr_3 | g2505 | g2505.t1 | exon | g2505.t1.exon5 | 18327189 | 18327194 |
| chr_3 | g2505 | g2505.t1 | cds | g2505.t1.CDS5 | 18327189 | 18327194 |
| chr_3 | g2505 | g2505.t1 | exon | g2505.t1.exon6 | 18328593 | 18328646 |
| chr_3 | g2505 | g2505.t1 | cds | g2505.t1.CDS6 | 18328593 | 18328646 |
| chr_3 | g2505 | g2505.t1 | TSS | g2505.t1 | NA | NA |
Sequences
>g2505.t1 Gene=g2505 Length=1446
ATGCATGACGTCTTTGTCGAATCTGTTCGAATTCAAATAAAACTTTCGGTTATGCAAAAG
AACGAACAAACTAGAAAGGAATATTGTATAAAGCGTGAAACGTCCCCAAGAAAAATGGCG
GACGAGGAACAATTCTCATTGTGTTGGAATAATTTCAACACCAACTTATCGGCTGGCTTT
CATGAATCGCTATGCCGCGGTGATCTCGTTGATGTAACTTTAGCAGCAGAAGGACAATTG
GTGAAGGCACATCGTCTCGTTCTCTCAGTATGTTCACCATATTTCCGTAAAATGTTTACA
CAAATGCCCGCAAATCAACATGCATTTGTTTTTCTCAAAGACGTTAGTTCTACTGCACTT
AAAGACTTGATTCAATTTATGTATTGTGGTGAAGTTAATGTTAAGCAAGAGGCATTGCCA
GCATTTATTAGCACAGCAGAAGCACTTCAAATTAAAGGATTAACAGAATCGAACGAAAAT
GTCGGCACTCAAGTCGGTTCAGTTTCACCAACCAAAGAACAACATGTCATCACATCCACT
CCATTACCTGACCTCGCATCCATTCGTCCACGTGCTAGTGCACGCGTTGTCACTCGCCCA
CAAACATTTAAATTAGAATCTGAGGGAAGCAGTGATGAGAAGCATACTGTTGCAATAGTA
CAAACACCTCAGCCAATTAAACGCATTGCACGTCAGTCAATTACCGCTGTCGCACCAAAA
CGACAAAAGACTCAAGTTAGCCAAATAGTACAAGAATCCCATCATCCTGATCCTCTCGAT
GCACCTGACCATGAAATAGTTTCACCGCAACAACTTAAAGAAACCACTGAATTCATTGAC
TTGCCAATCGAAACTACTAGTACGCTTAACCCAAAAACTGAACCGGAATATGTTGAAGAC
ACACAAGAAGTTGAGACTGAACAGGATGACGATAATCAATATGTCGAAGATGTGACTTAT
GGCGAAGAAAAGTACGAGGAATCATATTTCACTGAAGGTGACGCGGACAAGGCTGGAGTA
TCTGGATTTAGCGAAACATATGCAACAGAAGGCGATCAATCGGCAACGGAAGCACAAGAT
TACTTGCTTGACACATCAGAAAGTGTTTATTCATTTTTAAAAGGTCGTAAAGGTGGATAT
CATTTAATCCACGACAATTATATTTATCGCTCTAATTTTCGTCGGCAAGGTGTAGAGAAA
AATGTATTTTATTTTGAATGCATTTGGAATCGTAATGGACGTTGTCGAGGTCGCATAAAG
ACAGTCGGTGATAAATTATTTGTAACTAATAGTAATGTACCGCACAATCATGAACCTGAA
TATACGCGAATTCAGGATGCTAGACAAAGGGGTTTGATTTCAATGAAAACACTCTCAGAA
GCGGCAAGAGAATATGATGAACGTGTACAAATAAAAGTCGATATGATGCCTGAAATGTTA
CTTTAA
>g2505.t1 Gene=g2505 Length=481
MHDVFVESVRIQIKLSVMQKNEQTRKEYCIKRETSPRKMADEEQFSLCWNNFNTNLSAGF
HESLCRGDLVDVTLAAEGQLVKAHRLVLSVCSPYFRKMFTQMPANQHAFVFLKDVSSTAL
KDLIQFMYCGEVNVKQEALPAFISTAEALQIKGLTESNENVGTQVGSVSPTKEQHVITST
PLPDLASIRPRASARVVTRPQTFKLESEGSSDEKHTVAIVQTPQPIKRIARQSITAVAPK
RQKTQVSQIVQESHHPDPLDAPDHEIVSPQQLKETTEFIDLPIETTSTLNPKTEPEYVED
TQEVETEQDDDNQYVEDVTYGEEKYEESYFTEGDADKAGVSGFSETYATEGDQSATEAQD
YLLDTSESVYSFLKGRKGGYHLIHDNYIYRSNFRRQGVEKNVFYFECIWNRNGRCRGRIK
TVGDKLFVTNSNVPHNHEPEYTRIQDARQRGLISMKTLSEAAREYDERVQIKVDMMPEML
L
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2505.t1 | CDD | cd18315 | BTB_POZ_BAB-like | 69 | 153 | 1.65152E-36 |
| 6 | g2505.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 49 | 183 | 2.8E-28 |
| 7 | g2505.t1 | Gene3D | G3DSA:2.20.25.240 | - | 364 | 452 | 4.3E-16 |
| 10 | g2505.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 308 | - |
| 3 | g2505.t1 | PANTHER | PTHR23110:SF97 | MODIFIER OF MDG4 | 39 | 234 | 3.5E-94 |
| 4 | g2505.t1 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 39 | 234 | 3.5E-94 |
| 1 | g2505.t1 | Pfam | PF00651 | BTB/POZ domain | 60 | 160 | 4.5E-24 |
| 2 | g2505.t1 | Pfam | PF04500 | FLYWCH zinc finger domain | 372 | 437 | 8.0E-11 |
| 11 | g2505.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 70 | 136 | 21.347 |
| 9 | g2505.t1 | SMART | SM00225 | BTB_4 | 70 | 166 | 2.0E-21 |
| 5 | g2505.t1 | SUPERFAMILY | SSF54695 | POZ domain | 46 | 157 | 1.41E-26 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
