General information for g2510.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Peroxisomal membrane protein PEX16.
Parent gene
- The parent gene g2510 is located on chr_3: 18341595..18342496 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2510 | g2510.t2 | TSS | g2510.t2 | 18341342 | 18341342 |
| chr_3 | g2510 | g2510.t2 | isoform | g2510.t2 | 18341595 | 18342496 |
| chr_3 | g2510 | g2510.t2 | exon | g2510.t2.exon1 | 18341595 | 18342496 |
| chr_3 | g2510 | g2510.t2 | cds | g2510.t2.CDS1 | 18341627 | 18342496 |
| chr_3 | g2510 | g2510.t2 | TTS | g2510.t2 | 18342541 | 18342541 |
Sequences
>g2510.t2 Gene=g2510 Length=902
CGAACGACGGTAGTAACATATTGACAGAAGCTATGCTTAGTTTTTCAAACTTGCTTGTCG
TTTTTAATGATCAAATCATTAGAAGAGAAGTTATTAATCGACATGATGACGATTCGAGAG
AAAGATACGATGAAGAGCATAAACTTAAATTGTTTCTTACGATTTTAGACAATTTAGAAG
TGCTTATAGAACTAACATCAAAGAAAATGTTTGGCAATAAGAGGAAATTTATTGTTATCT
TCATAATACAAACTGTGAAGTGTGTTGGACGGCTAGTTTTATTGATTAAATATAAAAATA
GAATTTCACAGACACCGGCGATTGAATATTTAGATCGAAAAAATATCTTCAAACAAACTC
AGAATACAAGTCCATTACAACCAGAATTAAATCAAACTTCTTCAATAACACTAAAACTCA
AACGTTCTGGAAAAACGATACGAAAAGTGTCAAATGCGCCACCAATTTATAGTAGAAACT
TTAAAGCGCCTGAACTTGAATCATCAGATAGATTTTATTCCCTTAATCACACGGCAATAA
AAAATGCTGAAATTATGTATGTACTTAAGCCAATGCTCCATCTTGGTTCTGTAGCTGCAT
TTGGTTATAAATCATGGAAAAGTTACTTTTTTCCTCTATTATTGGATACATACAGCATTT
ATATTTACTATAAATATCGAAATTATATGACATCAGATCAAAAGAGAGAATTGAGTAGAA
GATGTGTTAATATGCTTCTTTATATATTGAGATCACCATTTTACGATAAATATTCGGCAG
ATAAAATTGATTCTTTCATGAGAGCACTCAATAACATTCCATTTGCAAGATTTATTGTTG
AACCATATAGACAATATCTACCTAATTATCAAGACACATACTTCTACATGTTCAGTAATT
AA
>g2510.t2 Gene=g2510 Length=289
MLSFSNLLVVFNDQIIRREVINRHDDDSRERYDEEHKLKLFLTILDNLEVLIELTSKKMF
GNKRKFIVIFIIQTVKCVGRLVLLIKYKNRISQTPAIEYLDRKNIFKQTQNTSPLQPELN
QTSSITLKLKRSGKTIRKVSNAPPIYSRNFKAPELESSDRFYSLNHTAIKNAEIMYVLKP
MLHLGSVAAFGYKSWKSYFFPLLLDTYSIYIYYKYRNYMTSDQKRELSRRCVNMLLYILR
SPFYDKYSADKIDSFMRALNNIPFARFIVEPYRQYLPNYQDTYFYMFSN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2510.t2 | PANTHER | PTHR13299:SF0 | PEROXISOMAL MEMBRANE PROTEIN PEX16 | 3 | 287 | 2.8E-45 |
| 3 | g2510.t2 | PANTHER | PTHR13299 | UNCHARACTERIZED | 3 | 287 | 2.8E-45 |
| 1 | g2510.t2 | Pfam | PF08610 | Peroxisomal membrane protein (Pex16) | 3 | 280 | 1.3E-52 |
| 6 | g2510.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 65 | - |
| 9 | g2510.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 85 | - |
| 4 | g2510.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 86 | 173 | - |
| 8 | g2510.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 174 | 192 | - |
| 7 | g2510.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 193 | 197 | - |
| 10 | g2510.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 198 | 215 | - |
| 5 | g2510.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 216 | 289 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
