Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2603 g2603.t4 isoform g2603.t4 19007430 19008457
chr_3 g2603 g2603.t4 exon g2603.t4.exon1 19007430 19008393
chr_3 g2603 g2603.t4 cds g2603.t4.CDS1 19007430 19008356
chr_3 g2603 g2603.t4 exon g2603.t4.exon2 19008453 19008457
chr_3 g2603 g2603.t4 TSS g2603.t4 19008878 19008878
chr_3 g2603 g2603.t4 TTS g2603.t4 NA NA

Sequences

>g2603.t4 Gene=g2603 Length=969
AGTTAATGTCTAATTTTTGCGAGTGATGGGCTTTGGAATATAATGGAAGCACAAATGGCT
GCAAATCTTGTACATGAAGCAGAATCAGCGAATGAACAAAATGCAAAAATTGGAATGAAA
AGTTGGAGAAATCCTTCACGTTATCTTGTAGATATAGCGCTTCAACGATGGCGAGATAAT
CGTTTACGATCTGATAACACATCAGTTGTTTGTGTGATGCTGGATATTCCAAATAAGAAA
AATAATAGTAACATTTTTGGCTGTATGCAACAACAAGAACAAAATAATTGTAGAACAATA
TATGATTATAGCACAAATGAGGCATATAATTTGGATTATATGGATATAAATTCATATACA
AATGAAGATATTGAACGTCAAAATTATAATTTATTAACACCTGCATCTTATCAAGACTTT
TTCTCTTCTCATTCACATCTATCAAATCAATTACCATCATTTTCGAGTGAAAGAGGCTAT
CAAAATTTATCACAATCAACTTCTTCATCATCAACCTCGCTGTCAAATTATGAGAATTCA
ATTTCAGCTGAATTAACGTATCATACAAGTAGCAATGAAAGTGCCTTTGTAAAAGGTTGC
TGTCCTAATGAGCGTTTCATGTTAGCAAAAGCTAATGAGCACATAAATTATCATATGAGC
TACGAACATCATAAAGAAATGTATCGAAGTATGGCTCAACAGCCTCTTCCGCCGTTGCAT
TACGCATATCGACCAGTTGTTTCACAATCCTATTTAGGACTCCCATCTATAAATGATAAC
AGTTTCAATCATTTTACTCCACGTCCAATGGAACGGTATAATTATTTACGTCCAACTGAG
GCTGAATTTCAAGAATTACATAAAGCAACTGAAGAAGAGGAAGATGAAGGTGGAGAAAGT
ACTTCATTAGAAAAGGAACCGAATGTTGAGAGCGATATAGATACAGATGATGGAGAAATG
GAATGGTCA

>g2603.t4 Gene=g2603 Length=309
MEAQMAANLVHEAESANEQNAKIGMKSWRNPSRYLVDIALQRWRDNRLRSDNTSVVCVML
DIPNKKNNSNIFGCMQQQEQNNCRTIYDYSTNEAYNLDYMDINSYTNEDIERQNYNLLTP
ASYQDFFSSHSHLSNQLPSFSSERGYQNLSQSTSSSSTSLSNYENSISAELTYHTSSNES
AFVKGCCPNERFMLAKANEHINYHMSYEHHKEMYRSMAQQPLPPLHYAYRPVVSQSYLGL
PSINDNSFNHFTPRPMERYNYLRPTEAEFQELHKATEEEEDEGGESTSLEKEPNVESDID
TDDGEMEWS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g2603.t4 MobiDBLite mobidb-lite consensus disorder prediction 268 309 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed