Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2603 g2603.t5 isoform g2603.t5 19007430 19008898
chr_3 g2603 g2603.t5 exon g2603.t5.exon1 19007430 19008393
chr_3 g2603 g2603.t5 cds g2603.t5.CDS1 19007430 19008393
chr_3 g2603 g2603.t5 exon g2603.t5.exon2 19008457 19008898
chr_3 g2603 g2603.t5 cds g2603.t5.CDS2 19008457 19008512
chr_3 g2603 g2603.t5 TSS g2603.t5 19008878 19008878
chr_3 g2603 g2603.t5 TTS g2603.t5 NA NA

Sequences

>g2603.t5 Gene=g2603 Length=1406
ACAACTGGCCACCAACAAGTAGTGGACTCCCAAGTACGGCTGGTACAACAGCTAGCATAG
CATTTATTCGTAAAGGTAAATTGTATATTGGGCATTGTGGAGATTCTGGAATAGTGCTTG
CAAAAGAACAACATGACTCATCGTGGAAAGCAGTGCCGCTAACGCTTGATCATAAACCCG
ATAGCATTTTAGAAAAGCAGCGTATTGAAGCTTGTGGAGGAAAAGTTGTTGAAAAACAAG
GAATTCATAGAGTAGTATGGTATCGTCCAAAATATCCACATCAAGGACCAATAAGAAGAA
ATACAAGGATCGAAGAGATTCCTTTTTTAGCTGTTGCTCGTTCGTTAGGAGACTTGTGGT
CCTACAATTTGAAAACTCAAAAATTTATGGTTTCACCAGAACCCGATGTTTCAGTTTATG
AGATAAATACGCTCACTGACAAATGTCTAATTTTTGCGAGTGATGGGCTTTGGAATATAA
TGGAAGCACAAATGGCTGCAAATCTTGTACATGAAGCAGAATCAGCGAATGAACAAAATG
CAAAAATTGGAATGAAAAGTTGGAGAAATCCTTCACGTTATCTTGTAGATATAGCGCTTC
AACGATGGCGAGATAATCGTTTACGATCTGATAACACATCAGTTGTTTGTGTGATGCTGG
ATATTCCAAATAAGAAAAATAATAGTAACATTTTTGGCTGTATGCAACAACAAGAACAAA
ATAATTGTAGAACAATATATGATTATAGCACAAATGAGGCATATAATTTGGATTATATGG
ATATAAATTCATATACAAATGAAGATATTGAACGTCAAAATTATAATTTATTAACACCTG
CATCTTATCAAGACTTTTTCTCTTCTCATTCACATCTATCAAATCAATTACCATCATTTT
CGAGTGAAAGAGGCTATCAAAATTTATCACAATCAACTTCTTCATCATCAACCTCGCTGT
CAAATTATGAGAATTCAATTTCAGCTGAATTAACGTATCATACAAGTAGCAATGAAAGTG
CCTTTGTAAAAGGTTGCTGTCCTAATGAGCGTTTCATGTTAGCAAAAGCTAATGAGCACA
TAAATTATCATATGAGCTACGAACATCATAAAGAAATGTATCGAAGTATGGCTCAACAGC
CTCTTCCGCCGTTGCATTACGCATATCGACCAGTTGTTTCACAATCCTATTTAGGACTCC
CATCTATAAATGATAACAGTTTCAATCATTTTACTCCACGTCCAATGGAACGGTATAATT
ATTTACGTCCAACTGAGGCTGAATTTCAAGAATTACATAAAGCAACTGAAGAAGAGGAAG
ATGAAGGTGGAGAAAGTACTTCATTAGAAAAGGAACCGAATGTTGAGAGCGATATAGATA
CAGATGATGGAGAAATGGAATGGTCA

>g2603.t5 Gene=g2603 Length=340
MVSPEPDVSVYEINTLTDKCLIFASDGLWNIMEAQMAANLVHEAESANEQNAKIGMKSWR
NPSRYLVDIALQRWRDNRLRSDNTSVVCVMLDIPNKKNNSNIFGCMQQQEQNNCRTIYDY
STNEAYNLDYMDINSYTNEDIERQNYNLLTPASYQDFFSSHSHLSNQLPSFSSERGYQNL
SQSTSSSSTSLSNYENSISAELTYHTSSNESAFVKGCCPNERFMLAKANEHINYHMSYEH
HKEMYRSMAQQPLPPLHYAYRPVVSQSYLGLPSINDNSFNHFTPRPMERYNYLRPTEAEF
QELHKATEEEEDEGGESTSLEKEPNVESDIDTDDGEMEWS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g2603.t5 Gene3D G3DSA:3.60.40.10 Phosphatase 2c; Domain 1 1 93 1.9E-18
5 g2603.t5 MobiDBLite mobidb-lite consensus disorder prediction 299 340 -
2 g2603.t5 PANTHER PTHR47992 ALPHABET, ISOFORM E-RELATED 1 174 2.6E-27
3 g2603.t5 PANTHER PTHR47992:SF79 PROTEIN PHOSPHATASE 1D 1 174 2.6E-27
1 g2603.t5 Pfam PF00481 Protein phosphatase 2C 1 52 6.5E-10
7 g2603.t5 ProSiteProfiles PS51746 PPM-type phosphatase domain profile. 1 91 14.58
4 g2603.t5 SUPERFAMILY SSF81606 PP2C-like 1 92 6.02E-14

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016791 phosphatase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values