Gene loci information

Transcript annotation

  • This transcript has been annotated as Regulating synaptic membrane exocytosis protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2612 g2612.t2 isoform g2612.t2 19042662 19067777
chr_3 g2612 g2612.t2 exon g2612.t2.exon1 19042662 19042880
chr_3 g2612 g2612.t2 cds g2612.t2.CDS1 19042662 19042880
chr_3 g2612 g2612.t2 exon g2612.t2.exon2 19044761 19044880
chr_3 g2612 g2612.t2 cds g2612.t2.CDS2 19044761 19044880
chr_3 g2612 g2612.t2 exon g2612.t2.exon3 19044975 19045331
chr_3 g2612 g2612.t2 cds g2612.t2.CDS3 19044975 19045331
chr_3 g2612 g2612.t2 exon g2612.t2.exon4 19045391 19045652
chr_3 g2612 g2612.t2 cds g2612.t2.CDS4 19045391 19045652
chr_3 g2612 g2612.t2 exon g2612.t2.exon5 19054540 19055237
chr_3 g2612 g2612.t2 cds g2612.t2.CDS5 19054540 19055237
chr_3 g2612 g2612.t2 exon g2612.t2.exon6 19056357 19056555
chr_3 g2612 g2612.t2 cds g2612.t2.CDS6 19056357 19056555
chr_3 g2612 g2612.t2 exon g2612.t2.exon7 19057088 19057291
chr_3 g2612 g2612.t2 cds g2612.t2.CDS7 19057088 19057291
chr_3 g2612 g2612.t2 exon g2612.t2.exon8 19057738 19058027
chr_3 g2612 g2612.t2 cds g2612.t2.CDS8 19057738 19058027
chr_3 g2612 g2612.t2 exon g2612.t2.exon9 19058115 19058252
chr_3 g2612 g2612.t2 cds g2612.t2.CDS9 19058115 19058252
chr_3 g2612 g2612.t2 exon g2612.t2.exon10 19058368 19058505
chr_3 g2612 g2612.t2 cds g2612.t2.CDS10 19058368 19058505
chr_3 g2612 g2612.t2 exon g2612.t2.exon11 19059024 19059239
chr_3 g2612 g2612.t2 cds g2612.t2.CDS11 19059024 19059239
chr_3 g2612 g2612.t2 exon g2612.t2.exon12 19060492 19060620
chr_3 g2612 g2612.t2 cds g2612.t2.CDS12 19060492 19060620
chr_3 g2612 g2612.t2 exon g2612.t2.exon13 19060680 19061061
chr_3 g2612 g2612.t2 cds g2612.t2.CDS13 19060680 19061061
chr_3 g2612 g2612.t2 exon g2612.t2.exon14 19061125 19061320
chr_3 g2612 g2612.t2 cds g2612.t2.CDS14 19061125 19061320
chr_3 g2612 g2612.t2 exon g2612.t2.exon15 19061382 19063306
chr_3 g2612 g2612.t2 cds g2612.t2.CDS15 19061382 19063306
chr_3 g2612 g2612.t2 exon g2612.t2.exon16 19063364 19063528
chr_3 g2612 g2612.t2 cds g2612.t2.CDS16 19063364 19063528
chr_3 g2612 g2612.t2 exon g2612.t2.exon17 19065355 19065472
chr_3 g2612 g2612.t2 cds g2612.t2.CDS17 19065355 19065472
chr_3 g2612 g2612.t2 exon g2612.t2.exon18 19067077 19067266
chr_3 g2612 g2612.t2 cds g2612.t2.CDS18 19067077 19067266
chr_3 g2612 g2612.t2 exon g2612.t2.exon19 19067334 19067501
chr_3 g2612 g2612.t2 cds g2612.t2.CDS19 19067334 19067501
chr_3 g2612 g2612.t2 exon g2612.t2.exon20 19067568 19067777
chr_3 g2612 g2612.t2 cds g2612.t2.CDS20 19067568 19067777
chr_3 g2612 g2612.t2 TSS g2612.t2 NA NA
chr_3 g2612 g2612.t2 TTS g2612.t2 NA NA

Sequences

>g2612.t2 Gene=g2612 Length=6324
ATGTGTCATTTTAGACGTAAACAAGTCGAAGTAGAAAGTTTAGAGCAGAGCATAAGACAA
CGTTCCGAGCAACAAAAAAAGGCTGGTGTTGAACTAGATGCAACTTGTCAAATATGTCTA
AAGACACGTTTTGCTGATGGTATTGGACATGTTTGTCATTATTGTAACATTAGGTGTTGC
GCTAGATGTGGTGGAAAAGTTACATTACGTAGTACTAAGGTCATTTGGGTATGCATATTG
TGTCGAAAAAAGCAAGAATTGCTGTCGAAAACTGGGCAATGGATTAATAAAAGTACAAGT
CCAGAGGGTTTCATTAGACATGGTGGTAGCGATACTAGAACAACATTACTAAATCCGCAT
GATACAACCGATAAACGACCAAAATTAGAGCGAGCTCGAAGTGCCGCTGAAAAAGAAAAT
CAGCCATTACAACGAACTGGCAGCCTACTGCGGCGTCAATATTCACAACAAGAGACGTCA
ACGCAACGTCGAGCGTCTGCATCAGCATCCGATAGTGGCGTTGACGACAGTTATATACAA
CGAAGCCATTTACATTCGCAACATCAGCAAGGCATTACTGGATCGAATGTCGATGGTCCA
TATATAAACCAATCGCCTCTTTATCGTAATACGAGTAGTTCATATTATCCAACAAGCACT
AGTTATCCACTTGAAGATGATCCACGATATTATCAGGGAGAAATCGAAGGATTAATGCGA
ACACATCCGCATTTAGTTCATCCGCGACAACAAGGTTATATAAGTCAACAGCAACAACAA
CAGCAGCAACAATCAAGTTATATGAAGCAACAAAAGACGACACAAGACATGCAGCATCAT
TATGGCATGCAAGATCCGTATGGAAAGAAACGGCCTTTAGTTAGTGGTTCGTATTTGCCA
CAGCAACGATCATATAGCAGTTCTGAAGAAGATATTCGTTCAACACCTGAATTTGAAGCA
TGGAAATATTTTGATGGTTCATCGACATCAAAAGCAACATCAACGTCTATACGAAACTAT
CGATCGTCATCGCCAACGTCTTCTTCAAATATTAGTGGACTTGCAAAAGCGCAACCAATA
GCAAGTACGATAGTGGCACCTTCAAAGCTGGACATTCATCAAAGGAATCAATACAATCGT
GTTAATCACTCGAGTCATATTTACAATAATAACAATAACAATCGTATAGGTAGTAGCTAT
TATCACAATAATACCCTTCCTTCATCGCACATTAATGACCAATCGTTGCATAACGCAGAC
GATTTAGCGACCTATCATCATCATCAATACAACTTAGCGTCATCGCCAACGAAATCATCG
TCATCGTCATATAATAATTATAATTATAACAATAGAACCAGTGCCATACTCAATCAATCG
AATAGTGGTAGTAGCTCGTACAGTTATTATTCAAATAGTCGTTACCTAAGTGACTCGCTT
GATCCATATGTGGACGAGCAAGTGGCGGGCGATAGTCGACGATTTACTGAGCGTAGAAAG
AAAACCGTTCGCTTTGATGGTCAGGATTCTAACGAATTTTTACGTTGGGAAAGTGAGCGA
CAAGAGAGCCAAGACTCGACTACAAAAGACTCGGGCATTGACACGAGCAGTACATTCACC
AGCAGTGAGGATTCTAATCGCGGCGATGGACCAAAGAATCCTGTAAGTTGGCAAGTGTCG
GCAGATGCTCAGCGCATGATTGGTCATATGCTATTGCGAAAGAATATTGATGGTGAAGAT
ATTTTGGGTTTAAAAATTGTCGGTGGCAAGCCATTGTCATCGACACGCAAAGGTGCTATC
ATAGAAAAAGTTAAGCGTGGATCTATTGCGGAACAAGAAGGACATTTGAGAGTGGGCGAT
GAAGTGATTGAATGGAACGGTCGTTCGTTGCAAGGTAAAAGTGCACAAGAGGTGTACGAT
GTGATTGAAGAGAGTCGACATGAGTCACAAATTGAGTTAATTGTATCACGACCGTTGAGC
GTGAATCGAAAAGCTGCTCAAACTTCCTGGCGCCAGTCACACTCACCGATTCGACAAACG
CGACAATATCTTCACAAAGAATCATTTGACGTTCGTGATAAACCAAGTGTTTTGGTTACA
TCACCAGGTTCGCCTGATTTTAATTATCAACAGAAACTGCAGTCATCAGTTCATTCAAAG
CGACCTCTTGGGCGATATCAGAGACGCTTAATGCAATCTGGCTCTGTTGATCCAGATCCA
AATATTGGTGGGCGAACGCAAATTAAATTGGGCTTCGAATCAGGATCATTGCAGTTGATT
GTGACAATTGTATGTGCCGCTGATTTAACATATAGACCAAATGGGGCTGCTCGTAATCCT
TATGCCAAAATATTCTTGCTTCCTTGTCATTCAGACAAATCCAAACGTCGAACGAAAACA
TTAGCTAGTACAAATGAGCCGCGATGGGGTCAAACTTTTACATTTACGGGTTTAAGGAGG
GCCGATTTAACGAATCGATTACTCGAGATAACACTTTGGGATTATGTGCGCTATGATGTG
CATGAGTTTTTAGGTGAAGTTGTAATAGATTTGCACAATCATCCGCTTGATGATGAGCCA
GAGTGGTACATGTTGCAGCCGCATCAAGAAGAATATCCTGGAGCGTATCATAAGTCTGAC
GATCATCATCTTCATCATCACCATTCAACTGGTCACGAAATAGATATAGTCACACCAACG
ACGGATCATTTATCACCGCCAAGCACAACATCGCGACTCAGCGATTCTGACACATCCGAA
TGTGATATTGATGGATTAACCACAGGACGTGATGGTGCGAGTATTTCCTCGCTCGGCAGT
AGTTCTAGTCCTCCACCAGAGGTTGATTTGATTGAGCGTCGGTCGCGACGCGATATGTCA
CCGCAAGGTCGTAAACGAGTTGCTGGTATGGTATCACGTGACTATCAAACTGTATCAGGA
ATTGGTGGTACACAATCAAATTTCCCACAATCACAATTACAACGAAGAGGTGAGCCAATT
TCAATGAGTCATAGAAGTCAATCAGCAGCACCAAGTGATTATCGAAGTGATAGACGAGGC
TCACTTTCGCCACCTGACGATCGTTACATTACTGGCACCAAAGACTACCCTGTTCTTCCA
TTAAATCAACAGCAACAATCATTCACACCGAAATTTCAATCACGTTCAGCGACAGCAACG
CCAACGGGATCACCAAAAAAGCGCCAATTGCCAAAAGTACCTCAAATATCACGAAATCCC
GCAATACGAGATCGACTGATGCAAGATTTTGAGGAACGTTCAATGGGTCGAAGACATCGT
GGTGTTCGACCCGCTCATCATATACCACAATATCGTAGTACTGCTGCTGGAGGTTGGGAG
CGACATTATTCAGGACTCTCTGATAGTGATCTAACAAATGCAGAGACACGCCTTCGACCA
AGAGCCTCCCTATCGCCAGATAAAGATTTTGGGGATTTTGGTGATTCTGATATGGAATCG
GTTGTAAGTGTCACATCGAGTGCCTTTTCAACGCAATCTGAAAGGCCGCGAGGTTCAAAA
GGATTGAGAAATGTTTATAAGCGAAGATCACTACAAAGAAGTTTACCAAATTCATGGTTT
CGTGATGAGATTTTCACTGAACGTGAAAGCGAATTTTTAAAATCAATAAATATGGACGAA
AGCATTCCACAATCTTCTGCAGTCATTTCAAACATTCCTATTAACATTCCAAATGCCCTA
AAATCAGTTTATCGAAGTAGCTCGCTAGTTAGTAGTAGTCTTCCAGAAAGATATAATAAG
CGTTTTTCTAGCTATGATTTTCCAATGCATTCTGCTTCATCATCATCACAACAGAGAAAA
GCTCTAATAGGTCACTCATTGAATGATTTACGAAATCGTTTTAGATCGAGATCGTCTGAA
CCAAATCTTATTAATAACTATGAAATTCCAACTAATCAAACTCAAACTATTGTCATTTCA
AACCAATCTGGTAATAAATCAAATCAAATTATTCTTAAATCTTCATTTTCTGATCAAAAT
CTCACAACAAATATTAATGCTGATAAAATGAAATTTAACTGTAGTGTTAAATATTCAGAC
AAAGAACCACAGATCGCAGTTATTCAACCGCTTCCTTTTCCTATAGAAGGACCATCGCCT
TTTTATGAATGCAATGATGTTTCAATAATTTCTTCTAGTTCAAGTAGTTCACGTAGTGTC
AGACGAAGACTTCCAAAAACTCCTAATATCACACGTAATACTCAATCACTTTATCTTCCT
TCATTTCCAAGAATCCCTTCAATGGATCTCGATAATTCTCCAATTTCGCCTCGTTTTGGT
AAAAGTCTTTCTGCTGATGCACCAACTAATGAGATTAATGAAAATTTATGTGATTTATCA
CAAGACTATTTAAAGTCTGACAATGAAGAAGGGAATGAATTAAGACGATCATATTCTTTA
ATTGCTGATGAACAAATTATTGATGTTGAATATGATTCAGATACTGGTTGGATGACAAAA
AATGTAAGAAAAAGTCCTTTTAAGAAAATTGACACACCTCCAATCATTGAATCAAAACCT
AGAGAACGCAGTTATAGTCGAGAAAATCTCAAACTTGATTTAAAATTTGAAAATAAACCC
AAAACACCAGTTGAGTCTATTGGTTCGATAATAAATGATGTAAGAACACAATTATTGCTT
TCAGAAAGTGATGATAAAAAAATTGATTTGAGTAGTTTGAAAGTTGAATTAGAAGGAAAA
GTAGTTTCACCAAAAATTCTTTTGACTGAGAAATATATTAGTGAAAAGACAATTGATTTT
GAGAATAAAATTACACTGAATGATGAAGCAAGTGCAAGCAATGAGAGTCCAAATGTTTTT
GAAAAATGTCGATCAAGAACTTTATCTGACGACACAAGTAAGACAGTGTCTGAGAATGAT
GACGATGATGAAGAAGTTTTCGAAGATGTCTTTGCTACACCACATAAACGTGAACGAAAT
GCTTCTTTTAGTGGTAAAACCAAAGCTAATTTATCTAATAAACATGAGCGTAGTAGCAGT
CTTGAAAATGTCCCAACAAAATCAAATATTCGTAAAAATTCTAGTGGTAAAAGTACCCGT
AATAGTTCTGTTAGCATTAATGAAAATCCTGAATATTTTGAATATACCATTCCAACTAAA
TCTACTAAATCTAGTAAAATTGCTTCTTCTCATGCTATCGCTAAACTTAATACCAAACCT
AAACGTGGCTCACTCAAAAAATCATCCACATCAAAATCACCTAAAAAACACACGGCATCA
ACATCATCGCGTAGCAGTGACTATGAACGCGGTCGATCGAGAAACGTAGAGGGTAGTCAT
CGCGAATCCTTTAAGAAAAACGACAGGACCAATGAAAGAAGTAGCGAACAAGATGCAAGT
GATCGCGAGCATAAAGATGGAAATCTTAATCGTAGTTTATCAAATACTGATACTAATATA
GAAGATAGAATAGATGGTAGTTTAAGTGATACAGCCGTCGGACTTACAGGCCTTGATAGT
CGACGCGGCAAACAGATGGACCAAAGATCTCCAAAAAGCGAAACGTCAACGCAAGATCGC
TATGGTGCTGGTGGAATGGGCAAGAAGAGCAATTCGACATCACAGTTGTCGGCAACAGAT
CAAGGCGTCACTACCCAACGCAAGCGTTCATCAGCTGGTTCCATTCAGCGCTCAATTGAA
GTCGTTCCGACTAGAGCTGGTAGTCTGCACTCAATTTCTAGTTCAGAGGGTTCATCATGG
TCACCATCATTAAGAATGGTGGTCGGTGAGGGAGGTCAACTCTCTGAATTTATTGACGGC
TTAGGACCTGGACAATTGGTCGGTCGTCAAGTTTTGGGTGCTCCAGCATTGGGCGATATT
CAATTATCACTGTGCTACCAAAAAGGCTTCCTTGAAGTTGAAGTGATACGAGCTAGAGGA
TTACAGGCGCGTTCTGGTTCAAAAGTACTGCCAGCACCATACGTAAAAGTCTACCTGGTG
TCAGGCAAAAAATGTATAGCGAAAGCAAAAACAACAGCAGCAAGAAAGACTTTAGATCCA
CTTTATCAGCAAATGTTGGCTTTTCGTGAACCTTTTCAAGGTTGCGTTCTGCAAGTCACA
GTTTGGGGTGATTATGGACGCATAGAAGGCAAAAAAGTATTCATGGGTGTAGCTCAAATA
ATGTTAGATAATCTTAATCTCTCACACATCGTCATCGGATGGTACAAACTCTTCGGAACA
ACCAGCCTGGTACCTAGTCACTCCAATATTGGTTTAGGTTCTAGACGATCCTCAATCGCG
TCACTAGATTCGCTTAAACTCTAA

>g2612.t2 Gene=g2612 Length=2107
MCHFRRKQVEVESLEQSIRQRSEQQKKAGVELDATCQICLKTRFADGIGHVCHYCNIRCC
ARCGGKVTLRSTKVIWVCILCRKKQELLSKTGQWINKSTSPEGFIRHGGSDTRTTLLNPH
DTTDKRPKLERARSAAEKENQPLQRTGSLLRRQYSQQETSTQRRASASASDSGVDDSYIQ
RSHLHSQHQQGITGSNVDGPYINQSPLYRNTSSSYYPTSTSYPLEDDPRYYQGEIEGLMR
THPHLVHPRQQGYISQQQQQQQQQSSYMKQQKTTQDMQHHYGMQDPYGKKRPLVSGSYLP
QQRSYSSSEEDIRSTPEFEAWKYFDGSSTSKATSTSIRNYRSSSPTSSSNISGLAKAQPI
ASTIVAPSKLDIHQRNQYNRVNHSSHIYNNNNNNRIGSSYYHNNTLPSSHINDQSLHNAD
DLATYHHHQYNLASSPTKSSSSSYNNYNYNNRTSAILNQSNSGSSSYSYYSNSRYLSDSL
DPYVDEQVAGDSRRFTERRKKTVRFDGQDSNEFLRWESERQESQDSTTKDSGIDTSSTFT
SSEDSNRGDGPKNPVSWQVSADAQRMIGHMLLRKNIDGEDILGLKIVGGKPLSSTRKGAI
IEKVKRGSIAEQEGHLRVGDEVIEWNGRSLQGKSAQEVYDVIEESRHESQIELIVSRPLS
VNRKAAQTSWRQSHSPIRQTRQYLHKESFDVRDKPSVLVTSPGSPDFNYQQKLQSSVHSK
RPLGRYQRRLMQSGSVDPDPNIGGRTQIKLGFESGSLQLIVTIVCAADLTYRPNGAARNP
YAKIFLLPCHSDKSKRRTKTLASTNEPRWGQTFTFTGLRRADLTNRLLEITLWDYVRYDV
HEFLGEVVIDLHNHPLDDEPEWYMLQPHQEEYPGAYHKSDDHHLHHHHSTGHEIDIVTPT
TDHLSPPSTTSRLSDSDTSECDIDGLTTGRDGASISSLGSSSSPPPEVDLIERRSRRDMS
PQGRKRVAGMVSRDYQTVSGIGGTQSNFPQSQLQRRGEPISMSHRSQSAAPSDYRSDRRG
SLSPPDDRYITGTKDYPVLPLNQQQQSFTPKFQSRSATATPTGSPKKRQLPKVPQISRNP
AIRDRLMQDFEERSMGRRHRGVRPAHHIPQYRSTAAGGWERHYSGLSDSDLTNAETRLRP
RASLSPDKDFGDFGDSDMESVVSVTSSAFSTQSERPRGSKGLRNVYKRRSLQRSLPNSWF
RDEIFTERESEFLKSINMDESIPQSSAVISNIPINIPNALKSVYRSSSLVSSSLPERYNK
RFSSYDFPMHSASSSSQQRKALIGHSLNDLRNRFRSRSSEPNLINNYEIPTNQTQTIVIS
NQSGNKSNQIILKSSFSDQNLTTNINADKMKFNCSVKYSDKEPQIAVIQPLPFPIEGPSP
FYECNDVSIISSSSSSSRSVRRRLPKTPNITRNTQSLYLPSFPRIPSMDLDNSPISPRFG
KSLSADAPTNEINENLCDLSQDYLKSDNEEGNELRRSYSLIADEQIIDVEYDSDTGWMTK
NVRKSPFKKIDTPPIIESKPRERSYSRENLKLDLKFENKPKTPVESIGSIINDVRTQLLL
SESDDKKIDLSSLKVELEGKVVSPKILLTEKYISEKTIDFENKITLNDEASASNESPNVF
EKCRSRTLSDDTSKTVSENDDDDEEVFEDVFATPHKRERNASFSGKTKANLSNKHERSSS
LENVPTKSNIRKNSSGKSTRNSSVSINENPEYFEYTIPTKSTKSSKIASSHAIAKLNTKP
KRGSLKKSSTSKSPKKHTASTSSRSSDYERGRSRNVEGSHRESFKKNDRTNERSSEQDAS
DREHKDGNLNRSLSNTDTNIEDRIDGSLSDTAVGLTGLDSRRGKQMDQRSPKSETSTQDR
YGAGGMGKKSNSTSQLSATDQGVTTQRKRSSAGSIQRSIEVVPTRAGSLHSISSSEGSSW
SPSLRMVVGEGGQLSEFIDGLGPGQLVGRQVLGAPALGDIQLSLCYQKGFLEVEVIRARG
LQARSGSKVLPAPYVKVYLVSGKKCIAKAKTTAARKTLDPLYQQMLAFREPFQGCVLQVT
VWGDYGRIEGKKVFMGVAQIMLDNLNLSHIVIGWYKLFGTTSLVPSHSNIGLGSRRSSIA
SLDSLKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g2612.t2 CDD cd00992 PDZ_signaling 569 655 2.25453E-14
18 g2612.t2 CDD cd04031 C2A_RIM1alpha 742 866 2.07327E-52
16 g2612.t2 CDD cd04028 C2B_RIM1alpha 1941 2087 2.79843E-86
13 g2612.t2 Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain 3 104 7.6E-22
12 g2612.t2 Gene3D G3DSA:2.30.42.10 - 540 660 1.4E-31
15 g2612.t2 Gene3D G3DSA:2.60.40.150 - 739 866 1.7E-28
14 g2612.t2 Gene3D G3DSA:2.60.40.150 - 1940 2086 3.2E-33
24 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 99 117 -
26 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 99 176 -
22 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 118 138 -
33 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 139 176 -
43 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 249 279 -
32 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 250 279 -
27 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 512 555 -
30 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 512 527 -
42 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 528 555 -
29 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 898 1029 -
37 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 901 923 -
34 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 930 944 -
40 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 949 963 -
35 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 977 1014 -
23 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 1047 1065 -
36 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 1047 1073 -
38 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 1611 1705 -
39 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 1649 1663 -
41 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 1676 1705 -
25 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 1720 1898 -
28 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 1767 1810 -
31 g2612.t2 MobiDBLite mobidb-lite consensus disorder prediction 1867 1898 -
4 g2612.t2 PANTHER PTHR12157 REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 5 995 0.0
6 g2612.t2 PANTHER PTHR12157:SF21 RAB3 INTERACTING MOLECULE, ISOFORM F 5 995 0.0
5 g2612.t2 PANTHER PTHR12157 REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 1846 2104 0.0
7 g2612.t2 PANTHER PTHR12157:SF21 RAB3 INTERACTING MOLECULE, ISOFORM F 1846 2104 0.0
3 g2612.t2 Pfam PF00595 PDZ domain 578 653 1.8E-8
2 g2612.t2 Pfam PF00168 C2 domain 758 863 2.6E-13
1 g2612.t2 Pfam PF00168 C2 domain 1971 2077 2.5E-14
46 g2612.t2 ProSiteProfiles PS50178 Zinc finger FYVE/FYVE-related type profile. 36 86 8.851
47 g2612.t2 ProSiteProfiles PS50106 PDZ domain profile. 569 657 17.169
44 g2612.t2 ProSiteProfiles PS50004 C2 domain profile. 758 848 14.6
45 g2612.t2 ProSiteProfiles PS50004 C2 domain profile. 1971 2059 11.581
21 g2612.t2 SMART SM00228 pdz_new 580 659 1.2E-15
20 g2612.t2 SMART SM00239 C2_3c 758 865 9.1E-17
19 g2612.t2 SMART SM00239 C2_3c 1970 2074 6.5E-12
11 g2612.t2 SUPERFAMILY SSF57903 FYVE/PHD zinc finger 12 99 2.27E-15
8 g2612.t2 SUPERFAMILY SSF50156 PDZ domain-like 555 660 1.21E-17
10 g2612.t2 SUPERFAMILY SSF49562 C2 domain (Calcium/lipid-binding domain, CaLB) 738 870 3.27E-26
9 g2612.t2 SUPERFAMILY SSF49562 C2 domain (Calcium/lipid-binding domain, CaLB) 1955 2079 8.26E-22

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031267 small GTPase binding MF
GO:0016020 membrane CC
GO:0005515 protein binding MF
GO:0006887 exocytosis BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values