General information for g2654.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2654 is located on chr_3: 19361490..19362574 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2654 | g2654.t3 | TSS | g2654.t3 | 19360809 | 19360809 |
| chr_3 | g2654 | g2654.t3 | isoform | g2654.t3 | 19361159 | 19362484 |
| chr_3 | g2654 | g2654.t3 | exon | g2654.t3.exon1 | 19361159 | 19361420 |
| chr_3 | g2654 | g2654.t3 | exon | g2654.t3.exon2 | 19361484 | 19362484 |
| chr_3 | g2654 | g2654.t3 | cds | g2654.t3.CDS1 | 19361537 | 19362484 |
| chr_3 | g2654 | g2654.t3 | TTS | g2654.t3 | 19363389 | 19363389 |
Sequences
>g2654.t3 Gene=g2654 Length=1263
AGCAATAATCCAGAAGATGAAGATAGTGACGATGATGATGATGATGACATTAATGTGGTA
ATTGGCGATATTAAATCAGGCGGTACTGCAGCTTATACAAAAGGACAAGATCAAAAGCAA
AAACAGCCAGGAAGTAAATTCAATATTGAAGAGTTTGAAAGTGTCGGTACAATTAATGGT
CAGCCTGCATATGAATTCACAACGGAAGGTGTTGAAGATAAACCATGGAGAAAGCCTGGT
GCTGATATCACAGACTATTTCAATTATGGTTTCAATGAAGAAACTTGGCGCGCATATTGT
GAGAGACAAAAGCGAATGCGAATTCATGAATCTGGGATTGGTCTTGCAAGTTTAACAGCT
GCACAGAATCCAGGAGGTAACATTAATCAACAGCAAGGACCAACAAATGAAGGTAGTGGT
GGAGGAAGACCATATATTAATATTGGAATGAATAAAGGAATGGGAAGAGGACCAAGACCA
CCGAGACCTGCTGGCACAATTGATGTTATTGGAGCACCTTCTCAAAATCCAATTCGACCA
ATGGCTCCACGAGAAAATGTTATTCAAGTTATGACAGCTGATCGACGTGAATATTCTCGT
ACTGTTGTGAATCAAAATCCTCAAATGCCAATGCAGTTCAATGTACCAGCAGAGGACTTT
TATAATCACGAAGAGCAGGATGCATTCAATTATGGTTATGAACCAACTCAAGATGGAAAT
CAATGGGAAGGAAATTCAAATTGGGCGCCAAGTGAAATTAAAGAATTAACTCCGATGAAT
CAACCACCACCAGGAATGCATAATGCACCAAATATGAATATTCCACCACCTATGATGCAA
ATGATGCCTCCACAAAATATGATTCCTCCTCTTATGGGGCAAATGCCAATAGTAAAACAA
GAACCAGAAGATAAACGCGACAATCGTCGAATGGGACGAGATAACAGAGATTTTAGAGAT
GATAGAAGGCATGATGATAGAAAAAGAATGCGTGAACGTTCAAATTCAAGAGAAAGAGGC
GATTTAAGAAAATCTGATCGACCTGATCGACCCAGAGATGACCGGCCACGTTCTGATCGT
GATAGATATCCTAGAGAGAGCAGCAGTCGAAGCAGCAGACGTTCAAAATCTCGTGATCGA
AGCAAAAGATCTAAAAGTCGCGATAGGAAACGTTCTAGATCAAAGGACCACAAAAGCAGC
GATGATAGAGGAAGTCGATCTGATAAATCAAAAAGAGAACGTTCAAAAAAGGAAGATGCA
TAA
>g2654.t3 Gene=g2654 Length=315
MRIHESGIGLASLTAAQNPGGNINQQQGPTNEGSGGGRPYINIGMNKGMGRGPRPPRPAG
TIDVIGAPSQNPIRPMAPRENVIQVMTADRREYSRTVVNQNPQMPMQFNVPAEDFYNHEE
QDAFNYGYEPTQDGNQWEGNSNWAPSEIKELTPMNQPPPGMHNAPNMNIPPPMMQMMPPQ
NMIPPLMGQMPIVKQEPEDKRDNRRMGRDNRDFRDDRRHDDRKRMRERSNSRERGDLRKS
DRPDRPRDDRPRSDRDRYPRESSSRSSRRSKSRDRSKRSKSRDRKRSRSKDHKSSDDRGS
RSDKSKRERSKKEDA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2654.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 33 | - |
| 5 | g2654.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 38 | - |
| 3 | g2654.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 269 | - |
| 6 | g2654.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 315 | - |
| 4 | g2654.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 288 | - |
| 1 | g2654.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 315 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
