Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative 39S ribosomal protein L9, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2688 g2688.t7 isoform g2688.t7 19719738 19720635
chr_3 g2688 g2688.t7 exon g2688.t7.exon1 19719738 19720131
chr_3 g2688 g2688.t7 exon g2688.t7.exon2 19720198 19720635
chr_3 g2688 g2688.t7 cds g2688.t7.CDS1 19720318 19720635
chr_3 g2688 g2688.t7 TTS g2688.t7 19720730 19720730
chr_3 g2688 g2688.t7 TSS g2688.t7 NA NA

Sequences

>g2688.t7 Gene=g2688 Length=832
ATGTTGAGATCAATATTTAAAAGTGGAATTAATTCCATTTCTACGCATTTATTAACATCT
AATAATGCTGTAACACAGCAAGTTAGAGTAAGCTTTTTTGTCATATTATTAATTTATAAA
ATGTAAATAACTTATTATCCTCATTTTAGACAACTTTTATATTGAGAAGAAAATATCCAT
TAGAATTGCATAAAAAGAATCAAAAACCAAGAAAATTAAGAGGAAAACATTTTAATTATG
TCCTTGTTGAAGACACAAATAGAACAGTTAAACCTGACATTGAGGTTGTTTTAAAGCAGT
TTATTCATGGTGTAGGAAAGAAAGGCGAAATTGTAAAAGTTCGACCAAATTTTGCTTATA
ATGAACTTCTTTTGACTGATAAAGCAGCTTATGCTTCACCATATGCTCAAAGAGTAAGTC
ATAGATGCAAATATTATCTTCTTTTGTTTTAATGACATTTCATTATCTTTCTCAGACAGT
AAATATGCTTCAGAATCGTGTATTTGCTATAGTAATGAATAAGGAACAACCTTGGGTAAT
TGAACCATGGCATGTTCGAGCTTCTTTACGAAAATGCGGCTATCATATCTTATCAGATGA
TGCTATTGAATTACCACAAGAAAAAATTACTGGTCCTGACTTACAAAAACAGAATAAAGA
ATTTATTGTTACTGTAACAATCAATAAAATGGAAAAAGCTAAAGTAAGATGTCGAATCCA
TCATTGGAGCACAAATCCTAGTGATCGACTTCCATACGTTTATGAACATTGGTTACAAGA
TACAGAACCGCTTTTTCCTTCTGAACAAAAATCAAACGAATCATCTTCGTAA

>g2688.t7 Gene=g2688 Length=105
MNKEQPWVIEPWHVRASLRKCGYHILSDDAIELPQEKITGPDLQKQNKEFIVTVTINKME
KAKVRCRIHHWSTNPSDRLPYVYEHWLQDTEPLFPSEQKSNESSS

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed