General information for g2688.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 39S ribosomal protein L9, mitochondrial.
Parent gene
- The parent gene g2688 is located on chr_3: 19719738..19721021 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2688 | g2688.t9 | isoform | g2688.t9 | 19719738 | 19721021 |
| chr_3 | g2688 | g2688.t9 | exon | g2688.t9.exon1 | 19719738 | 19720131 |
| chr_3 | g2688 | g2688.t9 | exon | g2688.t9.exon2 | 19720198 | 19720870 |
| chr_3 | g2688 | g2688.t9 | cds | g2688.t9.CDS1 | 19720318 | 19720635 |
| chr_3 | g2688 | g2688.t9 | exon | g2688.t9.exon3 | 19720931 | 19721021 |
| chr_3 | g2688 | g2688.t9 | TSS | g2688.t9 | NA | NA |
| chr_3 | g2688 | g2688.t9 | TTS | g2688.t9 | NA | NA |
Sequences
>g2688.t9 Gene=g2688 Length=1158
ATGTTGAGATCAATATTTAAAAGTGGAATTAATTCCATTTCTACGCATTTATTAACATCT
AATAATGCTGTAACACAGCAAGTTAGAGTAAGCTTTTTTGTCATATTATTAATTTATAAA
ATGTAAATAACTTATTATCCTCATTTTAGACAACTTTTATATTGAGAAGAAAATATCCAT
TAGAATTGCATAAAAAGAATCAAAAACCAAGAAAATTAAGAGGAAAACATTTTAATTATG
TCCTTGTTGAAGACACAAATAGAACAGTTAAACCTGACATTGAGGTTGTTTTAAAGCAGT
TTATTCATGGTGTAGGAAAGAAAGGCGAAATTGTAAAAGTTCGACCAAATTTTGCTTATA
ATGAACTTCTTTTGACTGATAAAGCAGCTTATGCTTCACCATATGCTCAAAGAGTAAGTC
ATAGATGCAAATATTATCTTCTTTTGTTTTAATGACATTTCATTATCTTTCTCAGACAGT
AAATATGCTTCAGAATCGTGTATTTGCTATAGTAATGAATAAGGAACAACCTTGGGTAAT
TGAACCATGGCATGTTCGAGCTTCTTTACGAAAATGCGGCTATCATATCTTATCAGATGA
TGCTATTGAATTACCACAAGAAAAAATTACTGGTCCTGACTTACAAAAACAGAATAAAGA
ATTTATTGTTACTGTAACAATCAATAAAATGGAAAAAGCTAAAGTAAGATGTCGAATCCA
TCATTGGAGCACAAATCCTAGTGATCGACTTCCATACGTTTATGAACATTGGTTACAAGA
TACAGAACCGCTTTTTCCTTCTGAACAAAAATCAAACGAATCATCTTCGTAAAAATTCGA
GTAAACGAATGATTAAGATAAGAATGTCGTCAGTTATGTATCATAATTTGTTAGTCATGC
AATAAACGAAGTTCATACTTAAACGAAATGATAAACCAATTTTTCATGATTAAAGGTTGT
TAAGAGCTATCATGTTCTTTCCCTAGACTATTTCTTCTTATCCTTATCACTTTATATTAT
TTACCCAAGAATTAATAACAATTATGTAATACATCAAATGAAATAATACACATGATGAAA
TTTCTATCAGACGTCTGATATCAAAATATTGATACTGCGCATTCTCTCCAAAAAATGAAA
ATACATTGCAATAATTTC
>g2688.t9 Gene=g2688 Length=105
MNKEQPWVIEPWHVRASLRKCGYHILSDDAIELPQEKITGPDLQKQNKEFIVTVTINKME
KAKVRCRIHHWSTNPSDRLPYVYEHWLQDTEPLFPSEQKSNESSS
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
