Gene loci information

Transcript annotation

  • This transcript has been annotated as Potassium channel subfamily K member 9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2689 g2689.t1 isoform g2689.t1 19721973 19723051
chr_3 g2689 g2689.t1 exon g2689.t1.exon1 19721973 19722011
chr_3 g2689 g2689.t1 cds g2689.t1.CDS1 19721973 19722011
chr_3 g2689 g2689.t1 exon g2689.t1.exon2 19722083 19722464
chr_3 g2689 g2689.t1 cds g2689.t1.CDS2 19722083 19722464
chr_3 g2689 g2689.t1 exon g2689.t1.exon3 19722524 19722668
chr_3 g2689 g2689.t1 cds g2689.t1.CDS3 19722524 19722668
chr_3 g2689 g2689.t1 exon g2689.t1.exon4 19722793 19723051
chr_3 g2689 g2689.t1 cds g2689.t1.CDS4 19722793 19723051
chr_3 g2689 g2689.t1 TSS g2689.t1 NA NA
chr_3 g2689 g2689.t1 TTS g2689.t1 NA NA

Sequences

>g2689.t1 Gene=g2689 Length=825
ATGCTAGAAGTGGTCATAATAGAAAACAAACCACATAAAGCTGGTCCCCAATGGAAATTT
CTAGGTGCGTTCTACTTTGCTACAGTGGTTTTAGCAATGATTGGATATGGTCATTCGACA
CCAAATACTAATGCGGGAAAAGCTTTTTGTATGATTTATGCAATGGTAGGCATTCCGTTA
GGTCTCGTAATGTTTCAATCAATCGGTGAACGTTTGAATAAATTTGCCTCAGTGATTATT
AGACGATTTAAGATTTTCATGAAATGCTCTCAAACAGAAGCAACAGAGATTAATTTAATG
GCAGCAACAGGATTTTTGAGTTCAATTATTATTTTAACAGGAGCAGCTGTATTTAGTAAA
TATGAAAATTGGTCTTATTTCGATAGTTTCTATTATTGCTTCGTTACATTGACTACAATT
GGTTTTGGCGATTATGTAGCATTACAAAATGATCGTGCACTTCAAAATAATCCTGGTTAT
GTAGCCTTATCGCTTGTTTTTATTCTCTTTGGTCTCGCTGTTGTTGCTGCTTCCATAAAT
TTATTGGTTCTTCGTTTCATGACAATGAATGCTGAAGATATGCGAATAGAAAATGAAGAA
CTTCAGAGACAAGCTATGAAGAACCAAGTCCAAGTAATGACATGCGAAGGAGAACGCGAT
AATATTTCAAATAAACTTATCAACTCTTCAGTCAATGAGGATCAACAGTCTGTATGTAGT
TGTAATTGTATGGGAACAAGCAGTGAAAATGGCCAACTTATTGACGGTTATCTACCTACT
GATCTTGTCACAAGTTCTTTAAGTCTCAAAAGAGCATCCGTTTAA

>g2689.t1 Gene=g2689 Length=274
MLEVVIIENKPHKAGPQWKFLGAFYFATVVLAMIGYGHSTPNTNAGKAFCMIYAMVGIPL
GLVMFQSIGERLNKFASVIIRRFKIFMKCSQTEATEINLMAATGFLSSIIILTGAAVFSK
YENWSYFDSFYYCFVTLTTIGFGDYVALQNDRALQNNPGYVALSLVFILFGLAVVAASIN
LLVLRFMTMNAEDMRIENEELQRQAMKNQVQVMTCEGERDNISNKLINSSVNEDQQSVCS
CNCMGTSSENGQLIDGYLPTDLVTSSLSLKRASV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g2689.t1 Coils Coil Coil 184 216 -
11 g2689.t1 Gene3D G3DSA:1.10.287.70 - 5 229 2.0E-57
3 g2689.t1 PANTHER PTHR11003 POTASSIUM CHANNEL, SUBFAMILY K 1 256 4.0E-128
4 g2689.t1 PANTHER PTHR11003:SF253 IP11374P 1 256 4.0E-128
7 g2689.t1 PRINTS PR01333 Two pore domain K+ channel signature 29 57 3.1E-16
6 g2689.t1 PRINTS PR01095 TASK K+ channel signature 62 78 3.3E-11
8 g2689.t1 PRINTS PR01333 Two pore domain K+ channel signature 138 147 3.1E-16
5 g2689.t1 PRINTS PR01095 TASK K+ channel signature 163 177 3.3E-11
2 g2689.t1 Pfam PF07885 Ion channel 16 72 2.9E-16
1 g2689.t1 Pfam PF07885 Ion channel 109 187 1.6E-17
17 g2689.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 19 -
21 g2689.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 36 -
14 g2689.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 37 47 -
23 g2689.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 48 68 -
16 g2689.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 69 96 -
19 g2689.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 97 118 -
13 g2689.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 119 129 -
20 g2689.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 130 148 -
18 g2689.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 149 159 -
22 g2689.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 160 184 -
15 g2689.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 185 274 -
10 g2689.t1 SUPERFAMILY SSF81324 Voltage-gated potassium channels 14 83 4.19E-17
9 g2689.t1 SUPERFAMILY SSF81324 Voltage-gated potassium channels 95 227 2.35E-24
26 g2689.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 37 -
27 g2689.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 49 68 -
25 g2689.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 96 118 -
24 g2689.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 130 147 -
28 g2689.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 162 184 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0005267 potassium channel activity MF
GO:0071805 potassium ion transmembrane transport BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values