General information for g2694.t76
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial.
Parent gene
- The parent gene g2694 is located on chr_3: 19731670..19732668 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2694 | g2694.t76 | isoform | g2694.t76 | 19731084 | 19731952 |
| chr_3 | g2694 | g2694.t76 | exon | g2694.t76.exon1 | 19731084 | 19731614 |
| chr_3 | g2694 | g2694.t76 | TTS | g2694.t76 | 19731095 | 19731095 |
| chr_3 | g2694 | g2694.t76 | cds | g2694.t76.CDS1 | 19731243 | 19731614 |
| chr_3 | g2694 | g2694.t76 | exon | g2694.t76.exon2 | 19731687 | 19731952 |
| chr_3 | g2694 | g2694.t76 | cds | g2694.t76.CDS2 | 19731687 | 19731692 |
| chr_3 | g2694 | g2694.t76 | TSS | g2694.t76 | 19732010 | 19732010 |
Sequences
>g2694.t76 Gene=g2694 Length=797
ATGGCATTATCTATGCTTCTTCGTTCTTCATCAAGACTTTCACCAGGTAAGTAATCGAAA
CCTACTCAAGAATGGATTAAATTCTATTGAAATCAGATTGCATAACAATTTTTATCAATC
TTTTTTCTTCACCTATTAATGTTTTCATAATTATTATTATTATTATTTTTATTCCTTCTA
TTTATTTCTAGTCTTAATGAACGCTTCACGAATTAGTTGTGCGCCAGTAACTCCGATACT
TGCAAATAAAATTGCCATCAATGTTAAATTCTAGACAAATTTCTGTAAGTCCTATTCGTC
AGTCTGCAACGGGTAATCATGTAGCATTATGGCAAGCAGAAAGAGCACTATCAGTTGGGC
TTTTGGGCATTGTTCCAGTTTCATTTTTGATTGAATCACAAGCTTCTGAATATCTTCTTT
CACTCGCTCTCGTTATGCATTTTCATTGGGGTTTGGAAGCACTCGTTACCGATTATGTTC
GTGAAGAACTTTTCGGCTCGTTACTTCCAAAAGTTTCACATGTTCTCCTTGCTCTCATTT
CGGCAGCTACATTAGCAGGACTTTTCATGATGGCTTATAAAGATCAAGGACTCGCAAAAA
CAACTCGCAAGATTTGGGCTATTCAACCAGCAAATTAAATGTTGAAAATTAGTAAGCATC
AGTTTAGGACCATACGAAATTATTTTGCATCAAAAATTTTATAGATTATTCAATCGATTG
CATGAAGATTAATTTGGTAATGTAAATTATGTAAAAGTCAATAAACAGTAATTTATTCCA
AAAAGTATTATACAAAA
>g2694.t76 Gene=g2694 Length=125
MLNSRQISVSPIRQSATGNHVALWQAERALSVGLLGIVPVSFLIESQASEYLLSLALVMH
FHWGLEALVTDYVREELFGSLLPKVSHVLLALISAATLAGLFMMAYKDQGLAKTTRKIWA
IQPAN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2694.t76 | Gene3D | G3DSA:1.20.1300.10 | Fumarate reductase respiratory complex transmembrane subunits | 3 | 121 | 5.6E-36 |
| 2 | g2694.t76 | PANTHER | PTHR13337:SF2 | SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL SUBUNIT, MITOCHONDRIAL | 15 | 120 | 1.3E-29 |
| 3 | g2694.t76 | PANTHER | PTHR13337 | SUCCINATE DEHYDROGENASE | 15 | 120 | 1.3E-29 |
| 1 | g2694.t76 | Pfam | PF05328 | CybS, succinate dehydrogenase cytochrome B small subunit | 10 | 120 | 2.1E-30 |
| 8 | g2694.t76 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 27 | - |
| 12 | g2694.t76 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 28 | 44 | - |
| 6 | g2694.t76 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 45 | 50 | - |
| 11 | g2694.t76 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 51 | 73 | - |
| 9 | g2694.t76 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 74 | 84 | - |
| 10 | g2694.t76 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 85 | 106 | - |
| 7 | g2694.t76 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 107 | 125 | - |
| 4 | g2694.t76 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 87 | 106 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005740 | mitochondrial envelope | CC |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed