General information for g2721.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucuronosyltransferase 2C1 .
Parent gene
- The parent gene g2721 is located on chr_3: 19894467..19895105 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2721 | g2721.t1 | TTS | g2721.t1 | 19890924 | 19890924 |
| chr_3 | g2721 | g2721.t1 | isoform | g2721.t1 | 19890993 | 19895105 |
| chr_3 | g2721 | g2721.t1 | exon | g2721.t1.exon1 | 19890993 | 19891388 |
| chr_3 | g2721 | g2721.t1 | cds | g2721.t1.CDS1 | 19890993 | 19891388 |
| chr_3 | g2721 | g2721.t1 | exon | g2721.t1.exon2 | 19891445 | 19892090 |
| chr_3 | g2721 | g2721.t1 | cds | g2721.t1.CDS2 | 19891445 | 19892090 |
| chr_3 | g2721 | g2721.t1 | exon | g2721.t1.exon3 | 19892146 | 19892228 |
| chr_3 | g2721 | g2721.t1 | cds | g2721.t1.CDS3 | 19892146 | 19892228 |
| chr_3 | g2721 | g2721.t1 | exon | g2721.t1.exon4 | 19892406 | 19892590 |
| chr_3 | g2721 | g2721.t1 | cds | g2721.t1.CDS4 | 19892406 | 19892590 |
| chr_3 | g2721 | g2721.t1 | exon | g2721.t1.exon5 | 19892644 | 19892911 |
| chr_3 | g2721 | g2721.t1 | cds | g2721.t1.CDS5 | 19892644 | 19892911 |
| chr_3 | g2721 | g2721.t1 | exon | g2721.t1.exon6 | 19893491 | 19893766 |
| chr_3 | g2721 | g2721.t1 | cds | g2721.t1.CDS6 | 19893491 | 19893766 |
| chr_3 | g2721 | g2721.t1 | exon | g2721.t1.exon7 | 19893829 | 19894468 |
| chr_3 | g2721 | g2721.t1 | cds | g2721.t1.CDS7 | 19893829 | 19894468 |
| chr_3 | g2721 | g2721.t1 | exon | g2721.t1.exon8 | 19894525 | 19894607 |
| chr_3 | g2721 | g2721.t1 | cds | g2721.t1.CDS8 | 19894525 | 19894607 |
| chr_3 | g2721 | g2721.t1 | exon | g2721.t1.exon9 | 19894664 | 19894818 |
| chr_3 | g2721 | g2721.t1 | cds | g2721.t1.CDS9 | 19894664 | 19894818 |
| chr_3 | g2721 | g2721.t1 | exon | g2721.t1.exon10 | 19894871 | 19895105 |
| chr_3 | g2721 | g2721.t1 | cds | g2721.t1.CDS10 | 19894871 | 19895105 |
| chr_3 | g2721 | g2721.t1 | TSS | g2721.t1 | 19895131 | 19895131 |
Sequences
>g2721.t1 Gene=g2721 Length=2967
ATGAAGTTTTTAAATTTTTTCTTATTCACATTTTTATCGATTCTTATCAATATCGATGGA
CTTAAAATACTGATGATATTGCCTCACACTAAATCACATTGGTTTATCGGTCATGCAATA
GTAAAATCATTAGTTGATGTAGGTCATGAAGCGATTGTTTTTTCAACATACAAGTTAGAA
AATCCCATCAAGGGTTATAGAGAAATTGACATCAGTAGCATATTGAGTAAGGAAGAAATG
CAAGAAGAATCAAATGTATTTTCCCTTCAAAAGAAGGGCAATGAATTGAGTGAAGCAGTT
TTATCACATGAAAATATTCAAGAATTAATGAAAAGTGAAGAGAAATTTGATGTTTGCTTT
TTGGAAAATTTTTACACTCAAGTTTTGTTGGGAATTTTTGATCATTTAGATTGTGTTTAT
GTGTCATTTACATCAACTTCAAATACATATTTGACTGACATTATAACTTCAAATCTATCA
CCACCATCATACCTACCAGCATTACATCTTCCATATTCTAGAAGAATGAATTTTTTCCAA
CGATGGATAAATACTTTTCATTATATGCTGCACAGTCTTATTTATCATGTTATTCATATT
CCACAACAAAGAGTAATTTTCAATAATTATTTTCCAAATGCCAAACGTTCATTTGATGAG
ATAATTAAATCATCAAGTATTACATTTGTAAACAGTCATTTTTCTATTACTGGAGCTCGA
CCACTTTTACCAAACATAATTGAAATTGCTGGCATCCACATTGACAGAACGAGACAAATT
CCTAAAGAATTAAAGAAAATTTTAGATTTTGCAGACAAGGGAGTTGTTGTTGTGTCATTG
GGAAGAAACTTTACTAGTTTTGTTACAGAGAAACATGAAGCTTTTGTGAAAGCTCTTGGA
AATTTGAAACAGAATGTGATTTTGAAATATGAGAACGAGACTCTTCTAAATAAGCCCAAT
AATGTTGTAATTTCCAAGTGGTTGCCTCAAAGAGACATTTTAGCTCATCATAATACACGA
TTGCTTATCACTCATGAAGGTATTTTAGGCATTACAGAAGCTCTATCGGAAGGAGTCCCA
ATTTTAATAATTCCCACGAATGGCAACCAAATTTCCAATGCAGCACATATAATTGAAGAA
AAATGCGGTTTAGCACTTGATTTGAAAAACTTAAATGAAAATTCACTTTCTGAAGCTATC
AATGAACTTATAATAAATTCAACATATAAAAATAATGCAGAAATGATTTCTCAACAATTT
CAAGATCGAACAATGAAACCAAATCAAGCAGTTATATATTGGACAGAATTTGTTGCAAGG
AACAAGGGAGCTGATCATTTACAGTCAGCTGGCAAGAATTTAAATTTCATTCAATATTTT
TCTATTGATTTTCGTTTAGACACTCAAGCAGTCATGAGATATTTAATTTTGTTTCTCATT
GGTTTTTTCTCATATTTCTGTTGTGTTAATGGATTAAAAATTTTAGCTTTACTGCCAATG
GGTAGTAAATCTCATTGGGCTGTTGGACATTCAATTATAAAACCACTTGTTGATGCAGGC
CATGAAGCAATAGTTTTGACGCCATATACATTGAAAACACCTATAAAGAACTATCATGAA
ATTGACATTTCTGATGTTTTAAAGCAATTCGAACAAGATCCTAACTTCAATGCATTTATC
ATACGTAAAATGCCAAAAATTACACAATTTACATTTTTGCATAGCATGGGAAATAAACTA
GTTGATGCAGTTATGAATAACACCAATGTTAAAGAATTTATGAAGCGAAAAGAAAAATTT
GATATCTGTTTTTTGGAAACTTTTCATACGAATGCATTATCTGGAATATTTGATCATTTC
GACTGCATTTATGTGCCATTTACTTCAGGAGCTATAGTTCAATGGGCAGATGTAATGACA
TCAAATCAATCACCATCTTCATATGTCGTCACACCTCTTCTTCCTTATGCCGGAAAATTA
ACTTTTATCGAGCGTTTCTGGAATGCATTTTATTTATTAATAGAAAATATTTCTTATTAT
TTTTATCATTTACCGAGCCAAAGAGCACTTTATAACAAATATTTTCCAAATGCAAAACGA
ACATTCGATGAAATGATTAAAGGTGCCGGATTAATGTTTTTAAGCAACCATGTCAGTATT
TCAGGACCTCGTCCATATTTAACAAACATGATTGAAATCGGAGGGATTCATATTCCACCA
CAGAAAGAATTACCAAAACATTTGAAAGAATTCATGGACACTGCAAATGATGGAGTGATT
TTATTTTCGATGGGATCGGTTGTCAAGGCAATTGATTGGCCAATTGAAATTCGTGAAGCT
CTTGTTAAATCATTTGCTAAATTGAAACAAAAAGTTATTTGGAAGTATGAAAATGAAACT
TTACCAAATAAGCCTGATAATGTAATGATTAGTCCATGGATTCCTCAAAGAGATATTTTA
GCTCATCCCAATGTCAAAATGTTCATTTCGCATGGAGGTTTTTTGGGTACAAGCGAAGCC
ACTTCTGAAGGTGTCCCAATACTTGGCATACCTATGTATGGCGATCAATCGCTGAATATT
GCAATATTTGAGAAAACTGGTCGTGGATTAAAACTTGATGTTGATGATATGAATGAAGAA
ACAATTACAAAATTGATCAATGAAATATTAACTAATCCAAAATATAAACAAAATGCTGAA
GAAGTTAAGAAAAGATTTCACGATCGACCAATGACACCTCAAGAAGCAGTGGTTTATTGG
ACAGAATTTGTTGCAAGACACAATGGTGCAAAATTTATGAGATCAGTTGGAAATGATTAT
AAAATGATTGAGTTTTTCCAAATTGATGTTTATATAACTATTGCTTTGCTTTTTTTGAGC
ATTCTTTTTGTCATTTATTCAGTATTAAAAATGATTTTAAGAAAAATATTCTCTAAAAAA
TCATCAAAGAAACAAAAAATGAATTGA
>g2721.t1 Gene=g2721 Length=988
MKFLNFFLFTFLSILINIDGLKILMILPHTKSHWFIGHAIVKSLVDVGHEAIVFSTYKLE
NPIKGYREIDISSILSKEEMQEESNVFSLQKKGNELSEAVLSHENIQELMKSEEKFDVCF
LENFYTQVLLGIFDHLDCVYVSFTSTSNTYLTDIITSNLSPPSYLPALHLPYSRRMNFFQ
RWINTFHYMLHSLIYHVIHIPQQRVIFNNYFPNAKRSFDEIIKSSSITFVNSHFSITGAR
PLLPNIIEIAGIHIDRTRQIPKELKKILDFADKGVVVVSLGRNFTSFVTEKHEAFVKALG
NLKQNVILKYENETLLNKPNNVVISKWLPQRDILAHHNTRLLITHEGILGITEALSEGVP
ILIIPTNGNQISNAAHIIEEKCGLALDLKNLNENSLSEAINELIINSTYKNNAEMISQQF
QDRTMKPNQAVIYWTEFVARNKGADHLQSAGKNLNFIQYFSIDFRLDTQAVMRYLILFLI
GFFSYFCCVNGLKILALLPMGSKSHWAVGHSIIKPLVDAGHEAIVLTPYTLKTPIKNYHE
IDISDVLKQFEQDPNFNAFIIRKMPKITQFTFLHSMGNKLVDAVMNNTNVKEFMKRKEKF
DICFLETFHTNALSGIFDHFDCIYVPFTSGAIVQWADVMTSNQSPSSYVVTPLLPYAGKL
TFIERFWNAFYLLIENISYYFYHLPSQRALYNKYFPNAKRTFDEMIKGAGLMFLSNHVSI
SGPRPYLTNMIEIGGIHIPPQKELPKHLKEFMDTANDGVILFSMGSVVKAIDWPIEIREA
LVKSFAKLKQKVIWKYENETLPNKPDNVMISPWIPQRDILAHPNVKMFISHGGFLGTSEA
TSEGVPILGIPMYGDQSLNIAIFEKTGRGLKLDVDDMNEETITKLINEILTNPKYKQNAE
EVKKRFHDRPMTPQEAVVYWTEFVARHNGAKFMRSVGNDYKMIEFFQIDVYITIALLFLS
ILFVIYSVLKMILRKIFSKKSSKKQKMN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 20 | g2721.t1 | CDD | cd03784 | GT1_Gtf-like | 21 | 434 | 1.0188E-44 |
| 19 | g2721.t1 | CDD | cd03784 | GT1_Gtf-like | 492 | 920 | 4.61621E-61 |
| 11 | g2721.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 255 | 422 | 1.6E-36 |
| 10 | g2721.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 739 | 908 | 8.0E-46 |
| 4 | g2721.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 13 | 464 | 2.6E-219 |
| 6 | g2721.t1 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 13 | 464 | 2.6E-219 |
| 3 | g2721.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 482 | 962 | 2.6E-219 |
| 5 | g2721.t1 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 482 | 962 | 2.6E-219 |
| 1 | g2721.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 97 | 472 | 2.2E-66 |
| 2 | g2721.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 502 | 980 | 3.8E-76 |
| 15 | g2721.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 18 | g2721.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 27 | - |
| 13 | g2721.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 28 | 473 | - |
| 17 | g2721.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 474 | 498 | - |
| 14 | g2721.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 499 | 949 | - |
| 16 | g2721.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 950 | 973 | - |
| 12 | g2721.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 974 | 988 | - |
| 9 | g2721.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 22 | 447 | 1.22E-82 |
| 8 | g2721.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 493 | 933 | 1.19E-96 |
| 7 | g2721.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 950 | 969 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed