General information for g2723.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucuronosyltransferase 2C1 .
Parent gene
- The parent gene g2723 is located on chr_3: 19897022..19898294 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2723 | g2723.t1 | TTS | g2723.t1 | 19897020 | 19897020 |
| chr_3 | g2723 | g2723.t1 | isoform | g2723.t1 | 19897022 | 19898294 |
| chr_3 | g2723 | g2723.t1 | exon | g2723.t1.exon1 | 19897022 | 19898142 |
| chr_3 | g2723 | g2723.t1 | cds | g2723.t1.CDS1 | 19897022 | 19898142 |
| chr_3 | g2723 | g2723.t1 | exon | g2723.t1.exon2 | 19898276 | 19898294 |
| chr_3 | g2723 | g2723.t1 | cds | g2723.t1.CDS2 | 19898276 | 19898294 |
| chr_3 | g2723 | g2723.t1 | TSS | g2723.t1 | NA | NA |
Sequences
>g2723.t1 Gene=g2723 Length=1140
ATGAAAATAAATATCAGCTGTCTTGGAATTCATTTTGATTGTCCAGTGATTGGTGTAACA
ACTTTTGGTGTCTCTTTTTGGACAAATTTCATTACAAGAACACCTTATCCTACAAGTTAT
GTTCCAAATCTTTTTACGTCATATTCTGATAATATGAGCTTTTCACAAAGATTTTTTAAT
ACTTTCATTTGGATTAGTGAAGAATTTTTGTGGCATTATTTGCATTATCCAAAGCAAGTT
GAATTGTATAAAAAGTTTTTTCCTCAAAATAAACCGGAATTGATTGAAGCAATAAAAAAT
GTTGCTCTGATTCTCAACAACAATCACTTTTCTACTTCAACAATTAAACCATCCGTTCCA
AATGTTATAGATATCGGTGGAATTTGTGTTCAACCTGCAAAAGAATTGCCAAAAGAATTT
CAAGAGTTTTTAGATTCTGCAACTGAGGGTGCAATTTTATTTTCAATGGGTTCATGCATT
CAAGCTGTTGATTGGCCTATTAATAAAAGAGAAATTTTTGTGCGAGTTTTCAGCAAATTG
AAACAGAAAGTTATTTGGAAGTATGAAAATGAAACTTTACCAAATAAGCCCGATAATGTA
ATGATTAGTCCATGGATTCCTCAAAGAGATATTTTAGCTCATCCTAATGTCAAAATGTTC
ATTTCGCATGGAGGATTGCTTGGCACAAATGAAGCAATTTTCGAAGCAGTACCAATACTT
GGCATTCCAATATATGGTGATCAAAGAATGAACATGAAAGTTGTTAATGAAAAAGGCTTA
GGATTGAAGCTTGACTTTCACACATTTAATGAAAATGATTTGATAAAAGCACTCGATGAA
ATTTTAAATGGAAGTGAAATTTCGAACAAAGCAAAAGAGTTTTCAACAATTTACAGAGAC
AGACCAATGACACCACAAGAGACAGCTGTTTATTGGGTTGAATATGTCATAAAGCACAAA
GGTGCACCACATCTCAGAACGACAGCTTGGAAATTGAACTATATCGAATTCTACAATATT
GATGTGTACATGACAATGTTGATTTCATTTTTAAGTTTTCTATTTTTAATTAAATTTGCA
ATTTGTAAAATTTTGTTACTTAAAGTTTGGCGTTTGAAAAATAAAGTAAAGAAACAGTAA
>g2723.t1 Gene=g2723 Length=379
MKINISCLGIHFDCPVIGVTTFGVSFWTNFITRTPYPTSYVPNLFTSYSDNMSFSQRFFN
TFIWISEEFLWHYLHYPKQVELYKKFFPQNKPELIEAIKNVALILNNNHFSTSTIKPSVP
NVIDIGGICVQPAKELPKEFQEFLDSATEGAILFSMGSCIQAVDWPINKREIFVRVFSKL
KQKVIWKYENETLPNKPDNVMISPWIPQRDILAHPNVKMFISHGGLLGTNEAIFEAVPIL
GIPIYGDQRMNMKVVNEKGLGLKLDFHTFNENDLIKALDEILNGSEISNKAKEFSTIYRD
RPMTPQETAVYWVEYVIKHKGAPHLRTTAWKLNYIEFYNIDVYMTMLISFLSFLFLIKFA
ICKILLLKVWRLKNKVKKQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g2723.t1 | CDD | cd03784 | GT1_Gtf-like | 11 | 312 | 7.10606E-54 |
| 6 | g2723.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 131 | 300 | 4.7E-44 |
| 2 | g2723.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 8 | 352 | 1.9E-108 |
| 3 | g2723.t1 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 8 | 352 | 1.9E-108 |
| 1 | g2723.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 28 | 376 | 3.9E-79 |
| 8 | g2723.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 341 | - |
| 9 | g2723.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 342 | 367 | - |
| 7 | g2723.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 368 | 379 | - |
| 5 | g2723.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 10 | 325 | 6.28E-87 |
| 4 | g2723.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 345 | 367 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00699 (glucuronosyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
