Gene loci information

Transcript annotation

  • This transcript has been annotated as Serine/threonine-protein kinase Tao.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2727 g2727.t4 isoform g2727.t4 19905148 19906122
chr_3 g2727 g2727.t4 exon g2727.t4.exon1 19905148 19905710
chr_3 g2727 g2727.t4 cds g2727.t4.CDS1 19905148 19905710
chr_3 g2727 g2727.t4 exon g2727.t4.exon2 19905793 19906122
chr_3 g2727 g2727.t4 cds g2727.t4.CDS2 19905793 19906120
chr_3 g2727 g2727.t4 TTS g2727.t4 19906222 19906222
chr_3 g2727 g2727.t4 TSS g2727.t4 NA NA

Sequences

>g2727.t4 Gene=g2727 Length=893
ATGGCGCCTGCACCTCGTCCTGGTAGTCTCAAAGATCCCGAGATCGCAGAACTCTTCAAC
AAGCATGATCCGGATAAAATATTCGAAGATTTGCGAGAAATTGGACATGGATCTTTTGGT
GCTGTATATTATGCACGATGCAATCTTACACGAGAGATTGTAGCTATTAAGAAAATGTCC
TATCTGGGAAAACAAAGTTTAGAAAAGTGGCAAGACATTCTAAAAGAAATTCGTTTCCTG
CGTCAATTAAATCATCCGAATACAATAGAGTATAAGGGATGTTATTTGCATGAAAATACA
GCATGGCTCGTGATGGAATATTGTGTTGGATCTGCTTCAGATATTATTGAAGTTCATAAG
CGACCTTTGAAGGAGGATGAGATTGCAGCAATTTGTGATGGAGTATTACATGGACTGAGT
TACTTGCATCTTTTGGGACGAATTCATAGAGACATCAAAGCGGGAAATATTTTATTAACT
GAACAGGGTGTTGTCAAATTAGCAGATTTTGGAAGTGCTGCTATAAAATGTCCTGCAAAT
TCTTTTGTTGGTACACCATATTGGATGGCACCTGAAGTTATTTTAGCAATGGACGAGGGT
CAATACGATGGAAAAGTGGATGTGTGGTCATGCGGAATAACATGCATTGAGTTAGCTGAG
AGAAAACCACCTTATTTTAATATGAATGCCATGTCTGCTCTTTATCATATTGCCCAAAAT
GATGCGCCCATTCTACAAGTTCAAACACCCGATTGGTCTCATCTATTTAGAAATTTTGTT
GAAGTATGTTTGAAAAAATCACCTCTGGATCGACCCACTTCAAGTGAACTTCTTGCTCAC
GCATTTGTATCTCGACAACGTTCACCAACTGTTCTCGTAGATTTGATTGCTAG

>g2727.t4 Gene=g2727 Length=297
MAPAPRPGSLKDPEIAELFNKHDPDKIFEDLREIGHGSFGAVYYARCNLTREIVAIKKMS
YLGKQSLEKWQDILKEIRFLRQLNHPNTIEYKGCYLHENTAWLVMEYCVGSASDIIEVHK
RPLKEDEIAAICDGVLHGLSYLHLLGRIHRDIKAGNILLTEQGVVKLADFGSAAIKCPAN
SFVGTPYWMAPEVILAMDEGQYDGKVDVWSCGITCIELAERKPPYFNMNAMSALYHIAQN
DAPILQVQTPDWSHLFRNFVEVCLKKSPLDRPTSSELLAHAFVSRQRSPTVLVDLIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2727.t4 CDD cd06607 STKc_TAO 26 285 0.0
4 g2727.t4 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 12 107 2.9E-34
5 g2727.t4 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 108 297 3.2E-59
2 g2727.t4 PANTHER PTHR47167 SERINE/THREONINE-PROTEIN KINASE TAO1-LIKE PROTEIN 1 296 1.3E-183
6 g2727.t4 PIRSF PIRSF000654 ILK 6 281 6.2E-28
1 g2727.t4 Pfam PF00069 Protein kinase domain 28 282 7.1E-63
8 g2727.t4 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 34 58 -
10 g2727.t4 ProSiteProfiles PS50011 Protein kinase domain profile. 28 283 45.644
9 g2727.t4 SMART SM00220 serkin_6 28 283 8.4E-85
3 g2727.t4 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 24 290 1.3E-80

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed