General information for g2733.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2733 is located on chr_3: 19922612..19923863 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2733 | g2733.t1 | isoform | g2733.t1 | 19922612 | 19923863 |
| chr_3 | g2733 | g2733.t1 | exon | g2733.t1.exon1 | 19922612 | 19922884 |
| chr_3 | g2733 | g2733.t1 | cds | g2733.t1.CDS1 | 19922612 | 19922884 |
| chr_3 | g2733 | g2733.t1 | exon | g2733.t1.exon2 | 19923036 | 19923863 |
| chr_3 | g2733 | g2733.t1 | cds | g2733.t1.CDS2 | 19923036 | 19923863 |
| chr_3 | g2733 | g2733.t1 | TSS | g2733.t1 | 19924882 | 19924882 |
| chr_3 | g2733 | g2733.t1 | TTS | g2733.t1 | NA | NA |
Sequences
>g2733.t1 Gene=g2733 Length=1101
ATGAATCCACTCAAATCAACATCAAAAAAGCGGCAGAGGAAGAAATCTCCTGGAAGCATC
GGCTTAAATTCGCCAACAAAGAAGAACTCAAAGATGAGAAAAATTGCAACCTCAAAAAAC
GTGGTCGGAAAAAATATTACTTTGAATTCAACACAGCAAGAAGACGATAGTGATACAATG
AGCACAACAAGCTCTAATCATGTACACATCGGTGATTCCTCACAACAGAAACAAATCAAA
TGTAAACCTGTATTCATTGAATCTGGATATCAAGTAATTTCTAATCTCATTAAGAACTGT
TCATTTCAAATCAAGCCAACGCTGAAAATAATAAACAACAATAAAGTATCAGTTCTAACT
TCAAGTGAAAAGGACAAAGAAGCTTTAATCAAAAAGTTAATTGATCAGAAATATCAATTC
TACACATTTGCAGAAAAGGGTAAGCGTAATGATACCTTTGTACTCAAAGGATTTTATCAA
ACATCCAAAGAAATTTTACTGGATCTACTAAAAGACAGTAAAATCTCAGCAATCTTTGTA
AAGCAAATATCATTCAACGCAGACAGACCAATTTATATGGTACAATTTGAATACAACACT
ACAAACATTCATCAACTAAATGCCTGCCACAGAGTGATTGACAACATTTATGTTAGATGG
GAATTATTAGATAGAAAAAAGAAAATTCATGTACAATGTTCCAAATGTAGACGTTGGGGC
CATACCCAAGCAAATTGTGGATATAAGCCAAGATGCATCAAATGTATTAATGATCATGAA
CCTGGAAATTGCCCTCGCACAACTAGAAATGACACTGAGGAATGCAAGACCTGGCCGAAG
CTTCCTGAAGGTGAACCTAATAGTTCAAGAATCAATCCAAGGTCTCGAATATCATTCGCT
GAAGCTGTCAACATTAAAAATAAGCATAAACCTGTAAGTTTCAATTCTAATGTTACAAAT
GATATTGATATTAATTATAATTCAAGTAACTCGTTATCTCAAGCAATAAGTTGCTTAAAA
AATATTTTTGAAAAAATGATCAGCGATCTACATAATACATTTGAGGCCTTAAGCCAACAA
CTTATCTCACAATATGGTTAA
>g2733.t1 Gene=g2733 Length=366
MNPLKSTSKKRQRKKSPGSIGLNSPTKKNSKMRKIATSKNVVGKNITLNSTQQEDDSDTM
STTSSNHVHIGDSSQQKQIKCKPVFIESGYQVISNLIKNCSFQIKPTLKIINNNKVSVLT
SSEKDKEALIKKLIDQKYQFYTFAEKGKRNDTFVLKGFYQTSKEILLDLLKDSKISAIFV
KQISFNADRPIYMVQFEYNTTNIHQLNACHRVIDNIYVRWELLDRKKKIHVQCSKCRRWG
HTQANCGYKPRCIKCINDHEPGNCPRTTRNDTEECKTWPKLPEGEPNSSRINPRSRISFA
EAVNIKNKHKPVSFNSNVTNDIDINYNSSNSLSQAISCLKNIFEKMISDLHNTFEALSQQ
LISQYG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2733.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - |
| 1 | g2733.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 31 | - |
| 3 | g2733.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 74 | - |
| 4 | g2733.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 11 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
