General information for g2737.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Beta-catenin-like protein 1.
Parent gene
- The parent gene g2737 is located on chr_3: 19936729..19938009 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2737 | g2737.t1 | TSS | g2737.t1 | 19936663 | 19936663 |
| chr_3 | g2737 | g2737.t1 | isoform | g2737.t1 | 19936729 | 19938009 |
| chr_3 | g2737 | g2737.t1 | exon | g2737.t1.exon1 | 19936729 | 19937915 |
| chr_3 | g2737 | g2737.t1 | cds | g2737.t1.CDS1 | 19936729 | 19937915 |
| chr_3 | g2737 | g2737.t1 | exon | g2737.t1.exon2 | 19937973 | 19938009 |
| chr_3 | g2737 | g2737.t1 | cds | g2737.t1.CDS2 | 19937973 | 19938009 |
| chr_3 | g2737 | g2737.t1 | TTS | g2737.t1 | 19938524 | 19938524 |
Sequences
>g2737.t1 Gene=g2737 Length=1224
ATGGAAATTGGTGAACTATTATCATTTAAACCAGAATCAATTCAAAAACGTAAGCAAAAT
GATGAAGATAATGATAAGGATAAAATACACTCGATTGATAAAAGACAGAAAATTGATGAG
AAAATTCTAGAGCTTGTAGCACAAGCCGATGATGATGAAGAAGAGGCACAAATTCTTGAT
GAAAATGGTCTTAAAAAACTTGCATTGCTATTTGAGAAACGTGTGTTAAAAAATCAAGTA
ACAAGACTAAAGTTTCCTGATCAGCCAGAAAAATTTATGGAGAGTGAAATTGAACTTTTT
GAAGTGATCCAGCAGCTTCGACCTGTGGCGACATTCCCAGATTTGTATTCTTTAATGATT
TCAATTGGTATGCTCTCATCAATGCTAGAGCTTCTCAATCATGCAAATTCAGACGTTTCT
GCTGCAATAGTTGAAATTTTAAATGAGCTTACTGATGTTGATGTGTTACATGAAAGTACA
AAAGGTGGCGATCATTTAATGAATTTTCTTAAAGAACAAGAAATAACAAAATTGCTGGTT
AATTGTCTTGAACGTTATAATGAGGCAGTAAAAGAAGAAGCTGATGCAGTGCACAATATT
TTGGGAATTTTTGAAAACATAACTGATTTGAGACCAAACATGTGCAAAGAAATTGCTGAT
CAAGGATTGTTAGCGTGGATTCTAAAAAGATTAAAAGTCAAGCAATATGATGCAAATAAG
CTTTATTGTTCGGAAATTCTTTCAATTCTTCTTCAAAATGACAATGATAATCGAGTGCTA
CTTGGAAATTTGGATGGAATTGATATATTATTGCAACAGTTGGCAGTTTATAAGAAACAT
GATCCTGCTGAGGGTGATGCAGAAGAAGTTGAATATATGGAAAATGTTTTCAACTGTCTT
TGCTCAAGTTTGCTTGCAAAAGAAAATCGCACACACTTTCTTAAAGGAGAAGGATGTCAA
TTAATGAATTTAATGCTGCGTGAAAAGAAATTAAGCAGAAATGGAGCACTAAAAGTTTTA
GATTTTGCATTATCAACTGCCGATGGCAAAGAGAATTGTCAAAAGTTTATCGACATCTTG
GGTTTGAGAACAATTTTTCCTCTCTTTATGAAGACACCGAAGAAAAATAAAAAACGCTTA
TTAAGCAGTGAAGAATTTGAAGAACATCTTTGCAGTATAATTAGCAATCTTTTAAGAAAT
ACAAAAGGAAGCCAAAAACAGTGA
>g2737.t1 Gene=g2737 Length=407
MEIGELLSFKPESIQKRKQNDEDNDKDKIHSIDKRQKIDEKILELVAQADDDEEEAQILD
ENGLKKLALLFEKRVLKNQVTRLKFPDQPEKFMESEIELFEVIQQLRPVATFPDLYSLMI
SIGMLSSMLELLNHANSDVSAAIVEILNELTDVDVLHESTKGGDHLMNFLKEQEITKLLV
NCLERYNEAVKEEADAVHNILGIFENITDLRPNMCKEIADQGLLAWILKRLKVKQYDANK
LYCSEILSILLQNDNDNRVLLGNLDGIDILLQQLAVYKKHDPAEGDAEEVEYMENVFNCL
CSSLLAKENRTHFLKGEGCQLMNLMLREKKLSRNGALKVLDFALSTADGKENCQKFIDIL
GLRTIFPLFMKTPKKNKKRLLSSEEFEEHLCSIISNLLRNTKGSQKQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2737.t1 | Coils | Coil | Coil | 35 | 62 | - |
| 7 | g2737.t1 | Gene3D | G3DSA:1.25.10.10 | - | 58 | 407 | 1.0E-141 |
| 6 | g2737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - |
| 5 | g2737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 31 | - |
| 2 | g2737.t1 | PANTHER | PTHR14978 | BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN | 1 | 404 | 6.0E-139 |
| 1 | g2737.t1 | Pfam | PF08216 | Catenin-beta-like, Arm-motif containing nuclear | 41 | 144 | 1.3E-31 |
| 4 | g2737.t1 | SMART | SM01156 | DUF1716_2 | 35 | 144 | 1.1E-38 |
| 3 | g2737.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 101 | 406 | 1.63E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K12864 (beta-catenin-like protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
