General information for g2741.t3
Yuki Yoshida
6/2/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Enoyl-[acyl-carrier-protein] reductase, mitochondrial.
Parent gene
- The parent gene g2741 is located on chr_3: 19945339..19946248 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2741 | g2741.t3 | TSS | g2741.t3 | 19945093 | 19945093 |
| chr_3 | g2741 | g2741.t3 | isoform | g2741.t3 | 19945151 | 19946248 |
| chr_3 | g2741 | g2741.t3 | exon | g2741.t3.exon1 | 19945151 | 19945331 |
| chr_3 | g2741 | g2741.t3 | exon | g2741.t3.exon2 | 19945389 | 19945520 |
| chr_3 | g2741 | g2741.t3 | exon | g2741.t3.exon3 | 19945609 | 19946248 |
| chr_3 | g2741 | g2741.t3 | cds | g2741.t3.CDS1 | 19945634 | 19946248 |
| chr_3 | g2741 | g2741.t3 | TTS | g2741.t3 | 19946325 | 19946325 |
Sequences
>g2741.t3 Gene=g2741 Length=953
ATGTTGATTTTAAGGCGAAGAATGAGTTGTTTAGCATCAGTTTTGAGATATTCTGATTAT
GGTGAACCGGCAAATGTTATCAAAATGTGTAAAGAACAATTGGAAGCACCAAAAGATGAC
AATTTGTTAGTAAAAATAGTTTATGCACCAATAAATCCAGCGGATATAAATACAATTCAA
GGAAAATATCCAGTTAAGCCAGAATTTCCTGCAGTAGGTGGTAATGAGTGTGTTGCTCAA
GTTATGGAACTTGGTTCAAATGTCAAATCTTTTTCTGTTGGCGATATTGTTCTTCCACTT
GCCACTGGATTAGTGTGAATAAATGCACGGCATATCGTATGATTAAAGATTTTGTCGAAT
TGAAAGCTGGTGATACTTTAATTCAAAATGGTGCAAATAGTGCAGTTGGTCAAGATGTAA
TACAATTATGTAAAATTTGGGGAATTAACAATGTTGGAATTGTAAGAGATCGTCCAGAAA
TTGATCAACTTAAAGAATATTTGAAAGAATTGGGTGCAACAGAGATTCTTACAGAAGAGC
AATGTAGAGCAACAAAAATTTTCAAAGAAGGTAAACTACCAAAACCAAAACTTGCATTGA
ATTGTGTAGGAGGAAAGAATTCATTGGAAATGTCGAAGCATATGGGTCAGAGAGGAGTGA
TGGTCACATATGGAGGAATGTCAAGAGAACCAGTTTTAGTACCAACATCAGCTCTTATAT
TTAAAGATCATGAATTTAAAGGATTTTGGATGACTCGATGGAAAGCTGAAAAAGGAAAAT
CAGATGAAGCTATTAAAATGGCAACAGATCTGTTTAACTTTATGAAAGATGGAAAATTAA
AAGCACCAAAACATGAACTAATACCGTACGAAAATTACAAACAAGCATTTGAAAATGTAT
TGAGTTTAAAAGGATTTGCTGGAGCAAAGGTTATTTTAGATTTTTCCAAGTAA
>g2741.t3 Gene=g2741 Length=204
MIKDFVELKAGDTLIQNGANSAVGQDVIQLCKIWGINNVGIVRDRPEIDQLKEYLKELGA
TEILTEEQCRATKIFKEGKLPKPKLALNCVGGKNSLEMSKHMGQRGVMVTYGGMSREPVL
VPTSALIFKDHEFKGFWMTRWKAEKGKSDEAIKMATDLFNFMKDGKLKAPKHELIPYENY
KQAFENVLSLKGFAGAKVILDFSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2741.t3 | CDD | cd08290 | ETR | 1 | 202 | 0 |
| 5 | g2741.t3 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 167 | 0 |
| 2 | g2741.t3 | PANTHER | PTHR43981 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL | 1 | 198 | 0 |
| 3 | g2741.t3 | PANTHER | PTHR43981:SF2 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL | 1 | 198 | 0 |
| 1 | g2741.t3 | Pfam | PF00107 | Zinc-binding dehydrogenase | 22 | 142 | 0 |
| 4 | g2741.t3 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 166 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
## [1] "No matching GO terms"KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed