General information for g2744.t21
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Chloride channel protein 2.
Parent gene
- The parent gene g2744 is located on chr_3: 19951005..19955422 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2744 | g2744.t21 | isoform | g2744.t21 | 19949707 | 19951005 |
| chr_3 | g2744 | g2744.t21 | exon | g2744.t21.exon1 | 19949707 | 19949984 |
| chr_3 | g2744 | g2744.t21 | TTS | g2744.t21 | 19949722 | 19949722 |
| chr_3 | g2744 | g2744.t21 | cds | g2744.t21.CDS1 | 19949979 | 19949984 |
| chr_3 | g2744 | g2744.t21 | exon | g2744.t21.exon2 | 19950317 | 19950457 |
| chr_3 | g2744 | g2744.t21 | cds | g2744.t21.CDS2 | 19950317 | 19950457 |
| chr_3 | g2744 | g2744.t21 | exon | g2744.t21.exon3 | 19950534 | 19951005 |
| chr_3 | g2744 | g2744.t21 | cds | g2744.t21.CDS3 | 19950534 | 19951001 |
| chr_3 | g2744 | g2744.t21 | TSS | g2744.t21 | NA | NA |
Sequences
>g2744.t21 Gene=g2744 Length=891
TACTATGAAAGGCTTCAGTCCATTATCACCTCATTCACCAGTAAATACGCCTTATTCAAC
AATCACCGGTGCAGAATCACGTTTACGTTCTGCGTTTGACATTATCTTTAGAAAATCAGC
TACACTACAAGATGTCCAAAATAACGATCCTGAGCTCGGTTCAAAATCATCAATTCAAAC
ACCCAGTATCGATGGAACTCCATATCCTTCATCTCACATTTCTAAAAAAGTTCAATTGCC
ACGCGAACGTGTCATAGACATGTCGGCTGAAGAACAAAAAATGTGGGAAATGGAAGAAAT
GTCGAAACCAATTGATTTGGATGCAGCCAATGTGAACATTGACCCATCTCCCTTCCAACT
TGTACGTACAACTTCATTACTCAAAGTTCATTCACTGTTTTCGATGATTGGTATTAATCA
TGCATACGTCACACATGTTGGTCGTTTGGTCGGTGTTGTAGCTTTGAAAGAGCTTCGTAA
AGCAATTGAAGATGTAAACAGCGGAAATTTAGTGCCAAAAGAGAAACAACAAGAGACAAA
AATACCAGAAACACCAATTTCACCGTGTGCTGAGCCACTTCTCAATAAAGAGCTTATGAA
AAATGAAAAAGAAGGTTGATTTAACAATCTTTTAGAAACCTCGAATGATTAATTTATCAT
GTGATTTTTCATCAACTGAACTTTTACTATAACTTTTACCTAGAAATGCATTAATGATAA
AGACATATGGTAAAGACATTTTTAGATTATAATGATCAAACTTTTCTTTAGATTTTAAGT
GTGTTTTAAAAAAAAAATTAAATTGTATTTGAAAACAAGTCATCGATGTGATTGTGTAAG
AACGAACAAATAAAAAATAGATTTTGGTCAGAATATAAAAATGCTTCTTAT
>g2744.t21 Gene=g2744 Length=204
MKGFSPLSPHSPVNTPYSTITGAESRLRSAFDIIFRKSATLQDVQNNDPELGSKSSIQTP
SIDGTPYPSSHISKKVQLPRERVIDMSAEEQKMWEMEEMSKPIDLDAANVNIDPSPFQLV
RTTSLLKVHSLFSMIGINHAYVTHVGRLVGVVALKELRKAIEDVNSGNLVPKEKQQETKI
PETPISPCAEPLLNKELMKNEKEG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2744.t21 | CDD | cd04591 | CBS_pair_voltage-gated_CLC_euk_bac | 112 | 160 | 5.53588E-18 |
| 7 | g2744.t21 | Coils | Coil | Coil | 195 | 204 | - |
| 6 | g2744.t21 | Gene3D | G3DSA:3.10.580.10 | - | 65 | 166 | 3.9E-35 |
| 4 | g2744.t21 | MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 73 | - |
| 5 | g2744.t21 | MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 72 | - |
| 1 | g2744.t21 | PANTHER | PTHR45720:SF4 | CHLORIDE CHANNEL PROTEIN 1 | 74 | 164 | 2.3E-26 |
| 2 | g2744.t21 | PANTHER | PTHR45720 | CHLORIDE CHANNEL PROTEIN 2 | 74 | 164 | 2.3E-26 |
| 3 | g2744.t21 | SUPERFAMILY | SSF54631 | CBS-domain pair | 86 | 162 | 4.45E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
