General information for g2793.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome regulatory subunit 6A-A.
Parent gene
- The parent gene g2793 is located on chr_3: 20302504..20303399 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2793 | g2793.t2 | TSS | g2793.t2 | 20301584 | 20301584 |
| chr_3 | g2793 | g2793.t2 | isoform | g2793.t2 | 20301681 | 20302304 |
| chr_3 | g2793 | g2793.t2 | exon | g2793.t2.exon1 | 20301681 | 20302304 |
| chr_3 | g2793 | g2793.t2 | cds | g2793.t2.CDS1 | 20301681 | 20302304 |
| chr_3 | g2793 | g2793.t2 | TTS | g2793.t2 | 20303186 | 20303186 |
Sequences
>g2793.t2 Gene=g2793 Length=624
ATGGCAGGAACACTTGAAGATAAATCAATTTGGGAAGACGAAGAATTACTTGGTGAAGAA
GTCTTGCGTATGCCAACAGAAGATATTCAAAATCGAACTCGATTGATGGACAATGAAATT
AAAATAATGAAGTCTGAAGTGATGAGAATCAATCATGAGTTACAGGCACAAAATGAGAAA
ATTAAGGACAATACTGAGAAGATTAAAGTGAACAAGACACTTCCCTATTTGGTTTCAAAT
GTTATTGAATTGCTCGATATAGATCCACAAGAAGAAGAAGATGATGGTGCAGTAAATTTG
CTTGATTCACAACGCAAAGGAAAGTGTGCAGTTATCAAGACTTCTACTCGTCAAACCTAT
TTCTTACCAGTTATCGGTTTAGTTGATCCTGAAAAATTAAAACCAGGCGATTTAGTTGGT
GTTAACAAAGATTCGTATTTGATTTTGGAAACACTTCCAGCAGAATATGATGCTCGAGTT
AAAGCTATGGAGGTTGATGAACGCCCGACAGAGCAATATTCGGATATTGGCGGTTTAGAT
AAGCAAATTCAAGAGCTGATCGAGGCAGTAGTTTTGCCAATGACACATAAAGAAAAATTC
AAAAATCTCGGTATTCATCCACCA
>g2793.t2 Gene=g2793 Length=208
MAGTLEDKSIWEDEELLGEEVLRMPTEDIQNRTRLMDNEIKIMKSEVMRINHELQAQNEK
IKDNTEKIKVNKTLPYLVSNVIELLDIDPQEEEDDGAVNLLDSQRKGKCAVIKTSTRQTY
FLPVIGLVDPEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLD
KQIQELIEAVVLPMTHKEKFKNLGIHPP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2793.t2 | Coils | Coil | Coil | 40 | 71 | - |
| 5 | g2793.t2 | Gene3D | G3DSA:2.40.50.140 | - | 39 | 162 | 5.7E-21 |
| 4 | g2793.t2 | Gene3D | G3DSA:3.40.50.300 | - | 163 | 208 | 1.6E-6 |
| 2 | g2793.t2 | PANTHER | PTHR23073 | 26S PROTEASOME REGULATORY SUBUNIT | 12 | 208 | 6.8E-99 |
| 3 | g2793.t2 | PANTHER | PTHR23073:SF90 | 26S PROTEASOME REGULATORY SUBUNIT 6A | 12 | 208 | 6.8E-99 |
| 1 | g2793.t2 | Pfam | PF16450 | Proteasomal ATPase OB C-terminal domain | 78 | 153 | 1.6E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0036402 | proteasome-activating activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
