General information for g2801.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative WW domain-containing adapter protein with coiled-coil-like protein.
Parent gene
- The parent gene g2801 is located on chr_3: 20356230..20357023 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2801 | g2801.t1 | TTS | g2801.t1 | 20353867 | 20353867 |
| chr_3 | g2801 | g2801.t1 | isoform | g2801.t1 | 20354377 | 20356919 |
| chr_3 | g2801 | g2801.t1 | exon | g2801.t1.exon1 | 20354377 | 20354452 |
| chr_3 | g2801 | g2801.t1 | cds | g2801.t1.CDS1 | 20354377 | 20354452 |
| chr_3 | g2801 | g2801.t1 | exon | g2801.t1.exon2 | 20354514 | 20354641 |
| chr_3 | g2801 | g2801.t1 | cds | g2801.t1.CDS2 | 20354514 | 20354641 |
| chr_3 | g2801 | g2801.t1 | exon | g2801.t1.exon3 | 20354702 | 20354859 |
| chr_3 | g2801 | g2801.t1 | cds | g2801.t1.CDS3 | 20354702 | 20354859 |
| chr_3 | g2801 | g2801.t1 | exon | g2801.t1.exon4 | 20354924 | 20355532 |
| chr_3 | g2801 | g2801.t1 | cds | g2801.t1.CDS4 | 20354924 | 20355532 |
| chr_3 | g2801 | g2801.t1 | exon | g2801.t1.exon5 | 20355599 | 20355777 |
| chr_3 | g2801 | g2801.t1 | cds | g2801.t1.CDS5 | 20355599 | 20355777 |
| chr_3 | g2801 | g2801.t1 | exon | g2801.t1.exon6 | 20355853 | 20356147 |
| chr_3 | g2801 | g2801.t1 | cds | g2801.t1.CDS6 | 20355853 | 20356147 |
| chr_3 | g2801 | g2801.t1 | exon | g2801.t1.exon7 | 20356227 | 20356404 |
| chr_3 | g2801 | g2801.t1 | cds | g2801.t1.CDS7 | 20356227 | 20356404 |
| chr_3 | g2801 | g2801.t1 | exon | g2801.t1.exon8 | 20356694 | 20356724 |
| chr_3 | g2801 | g2801.t1 | cds | g2801.t1.CDS8 | 20356694 | 20356724 |
| chr_3 | g2801 | g2801.t1 | exon | g2801.t1.exon9 | 20356888 | 20356919 |
| chr_3 | g2801 | g2801.t1 | cds | g2801.t1.CDS9 | 20356888 | 20356919 |
| chr_3 | g2801 | g2801.t1 | TSS | g2801.t1 | 20356994 | 20356994 |
Sequences
>g2801.t1 Gene=g2801 Length=1686
ATGCACTCGAGAAAAACGCGAATAAACGATGGATACTATGAGACACAAAGCCGCAGTTTT
CAGAATTCCAAATACAACAATCGATATTCAAACTATTATCGAGACAGAGACACATCTCCA
AAGAGAGCAGCACATCGTTCACAATCGCCAGAAGGATCACCGCGAAGTAGATATCATCAT
CAGAGCTCTAGCTATAGAAATAAAGATAGAGATAGAGATTATAAGAAGGAAAAATATTCT
GAAAAACGATGCCGTGATAGAGATTTAGAATATAAGAGCTATAAGAAATTTAAACTTACT
CGAGAACGTTCAAGTTCTGAGGAGGACCATAAGGAATCTGACAGAGTGTATGAGAAAACG
ACTAGATATGCTGATAGAGGAGATCACAATATTGCTAGACGAGTTGTAGATAAGGAGAGA
CGATTTGGTGACTGGAAAGAAATGATTAGTAAAAATAATGGTAAAAAGTATTATTACAAT
GAAAGGGATAAATCCTCACAATGGGATAAGCCCGAAGAATGGGTCGAATTTGAAATGTCA
AAAGAATATCGAGGATATCGGGAAAAGGAGAGAGATAAAAAATGTCGAGATGATAGGTAT
AATGTTAGAAATTACAATAGTAATAAACATTCCAGAGCAAACTCTCGCAGCAGATGGCCA
CCTACACATGAATCTTATTCAACATCATCTTCAGGACATCACAAACGACATGAAGAAAAT
CCTGATATGGAAATAAGTCCAGATTCGACTCCAACTTCCGAGCCTAGTTATTCATCTCCG
ACTGCCAATCAACATACAAATAATACAAATGTCAATAGCAATTTAGTAAATCATGATGAT
GTAATGACATCACCTAATGGACATTTAAAACATTCAAACATCATCAATTCAAATAACCAA
TTTCATCATCAATTATCAAATGCTTCATCTTCTGCACTCAATGCAATAAGTAAAGCAAAC
TCCAATTCCAATAAAAATTCAACAATCACTTCGTCAGCCTCACCATCAACTCATAACTAC
CAGTCCCACCATCATCGCTCTTTATCGCCCAACAATGACTTAGAGCGAACGTCAACAACT
GCAGGAAATCTGCACAACAACAATGTTGGTGGTAGTGGGCATGATATAAATTTACTACAT
CACAATTCAAATAGTTTAAGAAATTCACCGTCATACAGTGGCAATAATACCAATTCGACT
CTAACTACTGGCATTAATAACTCTTCGGTTTCTCGCTTAGAATTAAATAATAGTAACAAT
ACTAATCATTTAGATGGTCCACCTACTCCCGAACAAGATTTAAATTCTGGTGAACATCGA
AGACTTGAAACAACGTCTGGTATTAGTAGTCTGCAGAGTGTTTTATCAGTTTCACAAGTT
TCGAATCGATTAAACCTTTTAACTCCTAGTCTAGCCAAATTTTTTCGTGCTGATTTGATA
ACACATGTTACTAATTGGCCGTCAGAAGTTCTTGAGAAACAAGCTCAGAAATGTGCAGAA
GAAGTGTACTTGCTGGGCGATCTTGAATGTAGTAAAATTTCAGCAGAAATTCAATGTGCA
AGGAGTATAGTAAGAGTTGCAGAAATTGCTGCAACAATTCAAACACAAAGAAAACTATTT
CTTCAAGAACAAATTAAAAGTTTAGACGAATCACAGACGGAAAATTCTTCAACGATATCA
TATTGA
>g2801.t1 Gene=g2801 Length=561
MHSRKTRINDGYYETQSRSFQNSKYNNRYSNYYRDRDTSPKRAAHRSQSPEGSPRSRYHH
QSSSYRNKDRDRDYKKEKYSEKRCRDRDLEYKSYKKFKLTRERSSSEEDHKESDRVYEKT
TRYADRGDHNIARRVVDKERRFGDWKEMISKNNGKKYYYNERDKSSQWDKPEEWVEFEMS
KEYRGYREKERDKKCRDDRYNVRNYNSNKHSRANSRSRWPPTHESYSTSSSGHHKRHEEN
PDMEISPDSTPTSEPSYSSPTANQHTNNTNVNSNLVNHDDVMTSPNGHLKHSNIINSNNQ
FHHQLSNASSSALNAISKANSNSNKNSTITSSASPSTHNYQSHHHRSLSPNNDLERTSTT
AGNLHNNNVGGSGHDINLLHHNSNSLRNSPSYSGNNTNSTLTTGINNSSVSRLELNNSNN
TNHLDGPPTPEQDLNSGEHRRLETTSGISSLQSVLSVSQVSNRLNLLTPSLAKFFRADLI
THVTNWPSEVLEKQAQKCAEEVYLLGDLECSKISAEIQCARSIVRVAEIAATIQTQRKLF
LQEQIKSLDESQTENSSTISY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2801.t1 | CDD | cd00201 | WW | 143 | 173 | 1.11168E-4 |
| 5 | g2801.t1 | Gene3D | G3DSA:2.20.70.10 | - | 142 | 182 | 4.0E-9 |
| 20 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - |
| 17 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 29 | - |
| 15 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - |
| 13 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 60 | - |
| 18 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 82 | - |
| 12 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 119 | - |
| 14 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 268 | - |
| 11 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 228 | - |
| 16 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 244 | - |
| 9 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 268 | - |
| 19 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 357 | - |
| 10 | g2801.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 445 | - |
| 2 | g2801.t1 | PANTHER | PTHR15911 | WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL | 2 | 412 | 4.8E-49 |
| 3 | g2801.t1 | PANTHER | PTHR15911 | WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL | 261 | 556 | 4.8E-49 |
| 1 | g2801.t1 | Pfam | PF00397 | WW domain | 144 | 171 | 1.3E-8 |
| 7 | g2801.t1 | ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 145 | 171 | - |
| 21 | g2801.t1 | ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 145 | 173 | 11.94 |
| 8 | g2801.t1 | SMART | SM00456 | ww_5 | 140 | 173 | 5.2E-6 |
| 4 | g2801.t1 | SUPERFAMILY | SSF51045 | WW domain | 144 | 176 | 6.08E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K23884 (WW domain-containing adapter protein with coiled-coil)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
