General information for g285.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein Peter pan.
Parent gene
- The parent gene g285 is located on chr_3: 2417264..2418744 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g285 | g285.t1 | TTS | g285.t1 | 2417099 | 2417099 |
| chr_3 | g285 | g285.t1 | isoform | g285.t1 | 2417264 | 2418744 |
| chr_3 | g285 | g285.t1 | exon | g285.t1.exon1 | 2417264 | 2418626 |
| chr_3 | g285 | g285.t1 | cds | g285.t1.CDS1 | 2417264 | 2418626 |
| chr_3 | g285 | g285.t1 | exon | g285.t1.exon2 | 2418689 | 2418744 |
| chr_3 | g285 | g285.t1 | cds | g285.t1.CDS2 | 2418689 | 2418744 |
| chr_3 | g285 | g285.t1 | TSS | g285.t1 | 2418842 | 2418842 |
Sequences
>g285.t1 Gene=g285 Length=1419
ATGAGAAGAGAAAAGAGAAATAGAAAGAAGGGCATGCCAAAGAAAATGCCGAAGACATTT
GATGAACCACAAGCTTTGAAAAAGGCTCCACATACTTTTGTTATTCATCGAGGTTTATCA
TGTCCAAATATGGTCACACTATCAAGAGATTTTCGACGAGTCATGGAACCATTTACAGCC
TCAAATTTAAAAGAACGTAAATCGAACAAAATAAAAGATTTTGTGAGTTTATCCGGCATT
TTTCATGTTTCACACATGTGTCTCTTCACTCGATCTGAAAAATCAATGTCTTTAAAAATA
TCGAGAATGCCACAAGGACCAACATTGACATTTAGAGTTCATTCATTTGTCCTAGCAAAA
GATGTTCTATCATCACTAAAGAAGCAATTTGTTGAAGAAGCTTCGTTTCAAAATCCACCG
CTCGTTATTCTCAATGCGTTTTCGGGTGAAGGCAATCATATGAAGTTGATGGCACAAACT
TTTCAAAATATGTTTCCTCCTCTAAATATCTCGACTGTCAAATTATCGACTATTAAACGA
TGTGTTCTGTTTTCATACAATCCAATGACAAATTGTGTCGATATGAGACATTATGCTGTT
ACTCTCGTTCCAACTGGTGTTAACAAAGGAATCAAAAAGTTGGTAATGAAAAAAGTACCT
GATATGAGCAAATTCACGGACATTTCTGATTATGTTCTAAAGAGTCATCTTCTTTCTGAT
TCTGAATTTGAAGATGAAGAATCGCATGTGACACTTAGTGAATCACTTAAGAAAGGAAAT
GTTGAGAGTGGTCAATCAGCTGTTCGTCTTTATGAATTAGGTCCACGAATTACTTTTGAA
TTGTATAAAGTTGAAGCTGATTTGATGACAGGTGAAGTACTTTATCATAAAGAAATCGTG
AAAAGTGTAGATGAAATTCTTAAAATGAGAAAGAAACGTGCTGATCGAAGAGTATTAAAG
GAACAACGCAAGAAAGCACAAGAAGAGAATTTAGCAAAGAAAGGTAAATTAAAAGAAGAA
CATAAATTGAAAACAAGTGGCAACAAAGAATTCCAAGTAACTGAAAGTCATAAAAAGTTG
CTGAAAGATGCAGAAGAAGCAATTGATGATGAACCTGAAGATGATGCTGAATATTATCGT
GATGAAATTGGTCAGGAACCAGAAAAAGAATTGTTTCAGAATGCTATCAAATCAAATAGC
AGAAAGCGACCTCACATACCTAAATTCAAGACAAGTTTCAAGAAGCCGCGATTAGATAAA
GATGCAATGAATGAAAAAAAGAAGAAATTTTCAGATGATCACAAAGGATTTAAAAAAGGT
GGCAAAGACTTTAGGAAAGGAAGTGGTAAAAAAGATTTCAAGAAAGGAGGAAAGAAAAGC
TTTCAAAAAAGTCAAACGAAATTTAAGAAAAGAAAATGA
>g285.t1 Gene=g285 Length=472
MRREKRNRKKGMPKKMPKTFDEPQALKKAPHTFVIHRGLSCPNMVTLSRDFRRVMEPFTA
SNLKERKSNKIKDFVSLSGIFHVSHMCLFTRSEKSMSLKISRMPQGPTLTFRVHSFVLAK
DVLSSLKKQFVEEASFQNPPLVILNAFSGEGNHMKLMAQTFQNMFPPLNISTVKLSTIKR
CVLFSYNPMTNCVDMRHYAVTLVPTGVNKGIKKLVMKKVPDMSKFTDISDYVLKSHLLSD
SEFEDEESHVTLSESLKKGNVESGQSAVRLYELGPRITFELYKVEADLMTGEVLYHKEIV
KSVDEILKMRKKRADRRVLKEQRKKAQEENLAKKGKLKEEHKLKTSGNKEFQVTESHKKL
LKDAEEAIDDEPEDDAEYYRDEIGQEPEKELFQNAIKSNSRKRPHIPKFKTSFKKPRLDK
DAMNEKKKKFSDDHKGFKKGGKDFRKGSGKKDFKKGGKKSFQKSQTKFKKRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g285.t1 | Coils | Coil | Coil | 309 | 331 | - |
| 4 | g285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 472 | - |
| 5 | g285.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 459 | - |
| 2 | g285.t1 | PANTHER | PTHR12661 | PETER PAN-RELATED | 5 | 459 | 3.7E-87 |
| 1 | g285.t1 | Pfam | PF04427 | Brix domain | 44 | 283 | 1.4E-41 |
| 7 | g285.t1 | ProSiteProfiles | PS50833 | Brix domain profile. | 30 | 290 | 30.039 |
| 3 | g285.t1 | SMART | SM00879 | Brix_2 | 33 | 284 | 6.1E-63 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006364 | rRNA processing | BP |
| GO:0019843 | rRNA binding | MF |
KEGG
Orthology
- This transcript has been annotated with K14859 (ribosome biogenesis protein SSF1/2)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
