General information for g2875.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cyclin-dependent kinase 2.
Parent gene
- The parent gene g2875 is located on chr_3: 20835156..20835654 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2875 | g2875.t5 | isoform | g2875.t5 | 20835156 | 20835654 |
| chr_3 | g2875 | g2875.t5 | exon | g2875.t5.exon1 | 20835156 | 20835654 |
| chr_3 | g2875 | g2875.t5 | cds | g2875.t5.CDS1 | 20835304 | 20835654 |
| chr_3 | g2875 | g2875.t5 | TSS | g2875.t5 | NA | NA |
| chr_3 | g2875 | g2875.t5 | TTS | g2875.t5 | NA | NA |
Sequences
>g2875.t5 Gene=g2875 Length=499
CGGTTTAGCCCGCACTTTCAATATTCCTCTTCGAGCATATACACATGAAGTTGTAACACT
ATGGTATCGAGCTCCTGAAATTTTACTTGGATGTAAATTATATTCAACAGGCGTTGATTT
ATGGAGTCTTGGATGCATATTTGCTGAAATGATGATGCTAAGACCAATGTTTCAAGGTGA
TAGCGAGATTGATCAATTATATAGAATATTTAGACAATTTGGAACGCCTGATGAAACTAC
TTGGAAAAATATACGCCATTTGCCTGATTACAAGCCATCATTTCCAAAGTGGGAAAGACA
AGTGTTACCTCATCGCTTTTATTCAGACAACAATGCTGTAGAGTTGTTTCTAGCAATGAC
AAAATACGATCCTGATCAGAGAATATCAGCTAAAGATGCATTAGCACATAAATATTTTGA
TAATGTAGCCTTAATACCAGTAGAACTTCCTTTACCACCCGGCACACAGAAATCAAATAC
TTCTTCATATCTTTTGTGA
>g2875.t5 Gene=g2875 Length=116
MMMLRPMFQGDSEIDQLYRIFRQFGTPDETTWKNIRHLPDYKPSFPKWERQVLPHRFYSD
NNAVELFLAMTKYDPDQRISAKDALAHKYFDNVALIPVELPLPPGTQKSNTSSYLL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2875.t5 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 95 | 0 |
| 1 | g2875.t5 | PANTHER | PTHR24056:SF371 | CYCLIN-DEPENDENT KINASE A-2 | 2 | 95 | 0 |
| 2 | g2875.t5 | PANTHER | PTHR24056 | CELL DIVISION PROTEIN KINASE | 2 | 95 | 0 |
| 3 | g2875.t5 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 94 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
