General information for g2918.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Histone-lysine N-methyltransferase SETD1.
Parent gene
- The parent gene g2918 is located on chr_3: 21251460..21253369 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2918 | g2918.t1 | TSS | g2918.t1 | 21245366 | 21245366 |
| chr_3 | g2918 | g2918.t1 | isoform | g2918.t1 | 21245619 | 21253369 |
| chr_3 | g2918 | g2918.t1 | exon | g2918.t1.exon1 | 21245619 | 21245854 |
| chr_3 | g2918 | g2918.t1 | cds | g2918.t1.CDS1 | 21245619 | 21245854 |
| chr_3 | g2918 | g2918.t1 | exon | g2918.t1.exon2 | 21245937 | 21246189 |
| chr_3 | g2918 | g2918.t1 | cds | g2918.t1.CDS2 | 21245937 | 21246189 |
| chr_3 | g2918 | g2918.t1 | exon | g2918.t1.exon3 | 21246252 | 21250562 |
| chr_3 | g2918 | g2918.t1 | cds | g2918.t1.CDS3 | 21246252 | 21250562 |
| chr_3 | g2918 | g2918.t1 | exon | g2918.t1.exon4 | 21250627 | 21250786 |
| chr_3 | g2918 | g2918.t1 | cds | g2918.t1.CDS4 | 21250627 | 21250786 |
| chr_3 | g2918 | g2918.t1 | exon | g2918.t1.exon5 | 21251460 | 21251735 |
| chr_3 | g2918 | g2918.t1 | cds | g2918.t1.CDS5 | 21251460 | 21251735 |
| chr_3 | g2918 | g2918.t1 | exon | g2918.t1.exon6 | 21251796 | 21253369 |
| chr_3 | g2918 | g2918.t1 | cds | g2918.t1.CDS6 | 21251796 | 21253369 |
| chr_3 | g2918 | g2918.t1 | TTS | g2918.t1 | 21254346 | 21254346 |
Sequences
>g2918.t1 Gene=g2918 Length=6810
ATGAATGGAAGCGGTGAAAGAATAGCAACATCGTCAACTCCAAATCAACAGAAGCCTCCT
CCAGCGAGAAACTACAAACTTCTCGTAGATCCCTTCCTTACGGGAAAAAAGGAGCCAAAA
GTATATCGCTACGACGGCATTTATGTCAATGATCAAGTCACAACAGTCATTGTTCGTGAT
CCTCGTGTTCGTTTATCTACATTAGGAAGAGCTCAAGCAGATTTACCTGTTCCGAGATTT
ACAATAGATAAAGACTATGTCGGAGAGCCACCAGCTGTCGAAATAACTATAACAAACTTA
AATGATAATGTTGACAAAAATTTTCTTTCTGATATGCTGCAGAAAGCTGGACTTCAATGG
GATGAAATTAATATTTATTACCATCCAGAAAGCAATAAACATCTTGGCATTGCCAGGGTT
ATTTTAAAATCATCTCGACATATGAAAGCTTGTGTAGAAAGGTTTAATAAAAAATCTGTT
ATGGGAAAGATGATATCAGTTTTTCATGATCAATATGGTGATCAATGTCGAAAGCTAGTA
GAAGATTTAACAACAGAAAAGAAACCAATTGTACCTGCACTACCAACATCTTCGCTCATT
ATTCCAGAAGCTCCGCCAGTTCCTATTGATGAATTTCAGAGTTTTGAATTAAATGAGCAA
GTAATTTTACAACAACCTCCGCCACTTCCTTCAGAGGATAAATATTGGACAAGTAGTAGC
AGCAAATACAAAGATTCATCTTCAAGAGACGAATGGGATTCCTCTTCAAAATATAATTCA
CATCGAAGTTCAAAATATGACGATGATTATGAATATTCTCGCAGTAGTAGCAAATATGAT
AAATATGATCGAAAAGAGAGAGATTATGGTGGTAGTAGGTATGATAGACACAGAAGGGAC
AGAGATCGTGATCGAGACAGACGGTCAGACTATAGAAGTAAAGATGATTGGAAAGATCGA
GATAGAGACAGAGATCGTGAAAGGTCGCGAAAAGATAGAGATTATTATGAATATTCATCA
AGAAGTGAAAAGGATCATCATCGGTATAGTGGATATAGTAAAAGTTATTCAAGAACAGAA
TCTTATAGTTCCTCTTCTGCTGAAGCTGCATATTCAAATTATGATTCATATAGTTATTCA
AATTATCCAAATTACGGTCCATATCCACCGTATCAAACACCAATTGCTTCTTCAAATTGG
GCACCTCCACCTCCTCCTAAAGAAGATTCACCTTTGTCAAAACCACCACCTCCATCTGAT
GACTTAGAAACACGTGAAAAAATCAAAAAAGAGGATGACGAAACAGAAGTTGATCTCGAC
ACTAGAATCGCCATGTTGTTCAATGCAAAATCATTTGGTTCTGAACCGCCTTCATTATTT
AATAATTTAGATGATGGTGAAACAAAGACAGAAGAATCGATTGATGATATAGAAAGTCGA
TCAAATGATTGTAGTGACTCAAATTTACATCGAAAATTAAAATCACATCTGAAAATTGAG
GAAAATGATGAAGAGTCATCACGATCTAGTGCCAATAAAAATTTTAGCAATAATAATAAT
GACATCGATATGACATTAGTGAAAATTGAAAATGAAGTGAAAGTTGAAATAAAAGAGGAA
GGTGAGTTAAATGATGCAAATTCTTCATCTGACGAGAGTGCAATCAGCAGCATACCGAGT
CCATTTGAATCACGGAAAAGTTTTAAAGTAAATCGAAAATATCTACTTATTAACAAAAGA
AAACGATCGAAAGAGAAAAAGGTGAAAGTTGATTCTGGAGCAAGTGATATTTCATCAAGT
GAGGACGAATTGTTAGCCAAAGGAAGTTACAGTCCTACACTGCCATATAGAGGAGATGGA
GATACAAAAATTAAAGATGATGATCAAATGTCACTTTCAAGCTTATCATCTACTGAACCT
ATTATTAATAATGATCAGGATGTTAAGGTAGACGAAAAGAGTTTTGATGCATCCTCTGTT
GCTTACATGTATCCAATGGGATTTTCATCTTATCCAAATTATTATTATCAACAACAATCA
TTTCATCAATTTCAACAACCACATTGGAATTATGATGCATCAGCATATTATTCAAATTAT
AAGAAATCTGAAAAGGATCTTACAACGGAGCCAGATGATCCACATGAAGCTGCATGTAAA
AAAGTTATTGAAAAATTAATTCAGGAACTCAAGCAAATTCTTAAAAAAGATATCAATAAG
CGAATGATTGAGAACACAGCGTTTAAAAAATATGAAGCATGGTGGGATGAACAAGAGCGC
AATAAAAACAATACTCGAAGTCATAATGAAACTGAAAAAGCTTCAACTTCAATTGCAACT
CCATCATCTCTTCCTATATTCCGTGATCCATTAATTGATAGTTATCATCAACAAAGTGGT
AGCTTAGGTATTTTACGCAATTTTAGAATTCAACGAATTAAAAGAGAATCAACGACAACA
ACTAAAGTTGAAGATTCAAGGAAGAGTGATGCAGAAGAGGAGGATGATGATATGGTGCAT
GGTTCAGATTCTGAAAAAGAAGATATTCCACAACCAACAACAAAATCTACCTTTATTAAA
AGAAAAATTCATTCTAGTTCGAGTTCATCAGAGTCGAGTGAATCAGAAGAGACAAGTAGC
AGTGAAGAAGAGGAAGAAGAAAGAGATGATCATGCTTATAGTAGTGATACTGCAAGTTTG
TTAACAGATGATGAAATTGCTATGAAGAAAACTACTCCATCAAAGAAAGAAAAAGAAAAT
AACAAAATATATTCCGATTCTGATAGTGATGATGAACTTGAAGAATTACCTAAAACACAA
ACTGCTTCAAAACAAAAGCTCAAAATTTATTCAGACTCTGAAGAAGAAGAAGGTGAAATA
TCGGATACACCAACAATCACAAAAGAGAATGTAACAAAAGAAAAAACAAGTGAGCGTGAA
AGCACTCCAGAGGGTAAAAAGACTCCTGTTCATCCGCCAGTTGAATCAGATAGTGATTTC
TTCAATGATGATGTTATTTCGAAACCACCAAGAACACCAGGAAGAACATCAAGTGACGAT
CAAATTGAAAGTAAAGAGAATGAGAAGCCCACAGAAAAAATAATAGATCGATCATCACCA
CCATCACGCAGAAAATCACCAGAATTTAATGATCGCGTATATAGTGATTCAGAAGAAGAG
CGAGAATATCAGGAAAGAATTAGACGAAATACTGAATGGATGGAACAAATCGAACGAGAG
GCAAAGGAAGAAATGGAACGTCAAAAGCAATTAAAAGAACAACAAAAAGATGATAATGTT
ATCTCAAATGAGTACAAAAAACGCGCACTTTCTCCAATAGTTGAAAAGAAATTGGAAATT
AAAAAATCTAGCTTTGATGAACCTTTTACACCAACAACAAAATTACCTCCACCAACACCA
GGTGCTAACACCAGCATTCAAACAAACATTGATTTACTAAAGAAGGATAATGATCAGGAA
ATTGTTAAGAAGAAACGTGGTAGACCAAAAGGAAGTTTAGGGAAACCAAAAGAGCTCAAA
GAGAAAGAAAAGAAAGAGAAAATCAAAAATGGCACAATATCTAAAATTGATGAAAAATTA
TTTGCTCAACCTCAGCAGATGGAACAAAAATATTCACTTAAATTATCGCCATCATCTTCA
TCTGATGGTGGATCAAGTCAAGCGAGTCTTGTTGCAATGGAACATTGTTATTCACTGCCA
CCATCTGCTTCACCATCAACTTCGTCTTCGCCGAATCAAGAAATGGTACAAGCAGTTCGC
CATCTCGATCATGATCATGGTTACTATGGGAAATCTGACTCAGTTCCACTACAAACAATT
CAACCTGCACAGCTCGAAGAACAAAGCAAGAAAGATGCACCTTTACATCCACGTCCAGTT
GGTCGACCAAGAAAAGATCCAAACGCACCAAAAGCTCAATATACAAAACGCGATAAGACT
GGTCTGCCGATAGAAAAACAATCTAAAATTAAAGAAAAGGAAAAAGTGCAAAAAATTGAT
CTTAAGCAGCATCAGATGATGGTTGATAGTTATGTTCCTAAAGCAAAATATAACAAACGT
CAACAAAATGAAGAATTTGATGTGCTTTGTCAATTCCTTACACAAGGAATAGATCAAGAG
GATGTCGATTATATGAAACGTGCCTACACGTATCTCATTCAAAATGACATACCAGGTACT
GAACTGCTGCACCAAGTGCATTGGGTTGATCATTGTGCAACAGATCGATCATTTATGCCA
TCAGAGCCGAAAAAAAGGAAACGAGACAATTTGCCAGAATTGAGACAGCATGTAACTGGT
TGTGCACGAACAGAAGGATTTTATAAAATTGATTCAAAAGAAAAGGCGCATTATAAGTAT
CATCATTTGAAGGGAACCGCAGCTGGAAGTCACTTGGAAACGGCAAAAGTGGCAGCAAAA
ATGCAATCAGCTTCACGTGAAGCACGTTCAAATCAAAGGAGACTTTTAACTGCATTTGGT
GGTGCTACAGAATCAGATTTGCTGAAATTCAATCAATTGAAGTTCCGAAAGAAACAACTG
AAGTTTGCTAAATCAGCTATTCATGATTGGGGGTTGTTTGCGATGGAACCTATTGCTGCT
GACGAAATGGTTATTGAATATGTGGGACAAATGGTACGACCAAGTATTGCAGATTTACGT
GAATCAAAGTATGAAGCGATTGGGATTGGAAGCTCATATCTCTTTAGAATCGACTTGGAA
ACAATTATTGATGCAACAAAATGTGGAAATCTTGCTAGATTTATTAATCACAGTTGTAAT
CCAAATTGTTATGCAAAAGTCATCACCATTGAGTCGGAGAAGAAAATTGTCATTTATTCT
AAACAACCAATTGGAGTCAATGAAGAAATTACATATGACTATAAATTTCCTCTCGAAGAC
GAAAAGATTCCTTGTCTCTGTGGTGCTGCTGGTTGCAGAGTTAATCAATTAACAAACGTT
TATTATGACGAGTGTAGGTCTCAAATTTTCATAGTAAAATCTGCATCGATTTCAGTAAAA
AGTTTAGATAGCAAGAATGGAAATTTTTCCTTTAATTTACAGTCTAATAATGCAAATTTA
ATTGCAATAAAGTTTTCTGAAAATAATAATGTTCTTGCTGTACAAAGAACTGAAAATAAT
TTGGAATTGATTGGATTTAAAAATAACCAACTACAGCCTAATCAAATCATTTACTATGAG
ACTAAACAAAAGCAAGGAACAATTATATATGGTTTCATATGGACCGAACATGATGAGTTT
TTGATTGTGACTGCTGATTATGTTGAAATTTTTCAAATCAATATGGCTAAAAGGCAAATG
AAATCATTGAAATCGTTATCAGTATCGAGCAATTTCTTCTGTTATAGATCAAATTTTTTA
TTGCTCTCATCCAATAATGGCTTAATATTAACGCCTATTTTAATAAAACAAGGAAGCTTA
ACTAAACTCTCACCAATTCAAATCGAAGATGGACAGTCAATAACTGAACGTGATATAGTA
ATGGCTAAAATATATAATGATCCAGCTATTTTAATATTGAAGACCACACGAAATAGAACA
TTAGAAATTTTTGTATATCTCTTAGAAGTACCAACATTTAAGAAGAAGCATGTATTGAAA
CTATCATTGAATGGAAGGTGTGCTATAAGTTGCATTGATTCAATTATAATTGTGCATCAT
CAAACTTCGAAGGTGAGTTTACTCTTTGATATTGCTTTGAATGAGGATACAGACCCAATT
GACAAAAGCGTGATGATTCATCATCCATTAGTATTGGCAAAATCAATTAAGCCATTTTGT
GTGAAGATACCATCAGTTTCGTTAAAAAATGAAGTGATGAATTTTGAGCTTTATTCTGTT
AATTGGGTTATATTTTGTGATATAATTATTGATGTAAAATTGGGCTATCTATTTCAATTG
GAACTGGATATAACGAAAGTTCAAATAGGCGATAAAATCAAACTCATAGATTTCCTTATG
CATCGACAAAATGCAAAAATACATTTGTTATCAGTATTGTCACAACTCATCACAAGTGAC
TATGAAGAAATTAATTTGCCTATGCTAGAGATAATTTTTGATAAACTCAACAAAGTATAT
AAGCAAAAGTTGGATTATGACATGTCTAAATTAGAAGCATTACCATCACCATCAGGTTTC
AAATCTTTCACTACTCCATCAACATCAGCAATAGATAAGCCAAAAGAGGCTGTTGTGATT
GAACAAAATGATATTTTACAAATTTTTAATGCAATTTTTGACAAAAGTGTACTGGAAAAA
ATCTTGATGGCTTATATTTACTCTTTAGTAAAGAACTCAATCACATGCGAATATGATTTA
AGCAAACAGATCGTCGTCACTTTAATTGGGAATGACAAGATTTATGACTTGCAGCAAATA
TTGAGCTTTCAAATTCTTTTAGAATCAAAACCACTTGCATGCTTTTTGTTATCTCTTGCA
AACCATGATCCTTTAATCAGTCAAATGTCACTCGATATGCTAAAAAGACTTGGTGCACAT
GAAATTATCATAGAAATTCTCTTGGAACAAGGAAAAGTGATTGATGCCATGCGTCTTGCA
AAGCAACACACTAATATAGATCATGTTCCAGCAAGAAAATTCCTTGAAGCAGCTATGAAA
GATGATAATAAAATGACTTTCTATAGCATCTACAACTTTTTTATTTCAAGAAATCAACGA
TTGCGAGGGAATAATGAATTTTTGAAAAGTGAACAGTGTGATAATTTTGTTAGAATTTTT
GAGCAATTATTTCCTTCTGCTACAGCGTAA
>g2918.t1 Gene=g2918 Length=2269
MNGSGERIATSSTPNQQKPPPARNYKLLVDPFLTGKKEPKVYRYDGIYVNDQVTTVIVRD
PRVRLSTLGRAQADLPVPRFTIDKDYVGEPPAVEITITNLNDNVDKNFLSDMLQKAGLQW
DEINIYYHPESNKHLGIARVILKSSRHMKACVERFNKKSVMGKMISVFHDQYGDQCRKLV
EDLTTEKKPIVPALPTSSLIIPEAPPVPIDEFQSFELNEQVILQQPPPLPSEDKYWTSSS
SKYKDSSSRDEWDSSSKYNSHRSSKYDDDYEYSRSSSKYDKYDRKERDYGGSRYDRHRRD
RDRDRDRRSDYRSKDDWKDRDRDRDRERSRKDRDYYEYSSRSEKDHHRYSGYSKSYSRTE
SYSSSSAEAAYSNYDSYSYSNYPNYGPYPPYQTPIASSNWAPPPPPKEDSPLSKPPPPSD
DLETREKIKKEDDETEVDLDTRIAMLFNAKSFGSEPPSLFNNLDDGETKTEESIDDIESR
SNDCSDSNLHRKLKSHLKIEENDEESSRSSANKNFSNNNNDIDMTLVKIENEVKVEIKEE
GELNDANSSSDESAISSIPSPFESRKSFKVNRKYLLINKRKRSKEKKVKVDSGASDISSS
EDELLAKGSYSPTLPYRGDGDTKIKDDDQMSLSSLSSTEPIINNDQDVKVDEKSFDASSV
AYMYPMGFSSYPNYYYQQQSFHQFQQPHWNYDASAYYSNYKKSEKDLTTEPDDPHEAACK
KVIEKLIQELKQILKKDINKRMIENTAFKKYEAWWDEQERNKNNTRSHNETEKASTSIAT
PSSLPIFRDPLIDSYHQQSGSLGILRNFRIQRIKRESTTTTKVEDSRKSDAEEEDDDMVH
GSDSEKEDIPQPTTKSTFIKRKIHSSSSSSESSESEETSSSEEEEEERDDHAYSSDTASL
LTDDEIAMKKTTPSKKEKENNKIYSDSDSDDELEELPKTQTASKQKLKIYSDSEEEEGEI
SDTPTITKENVTKEKTSERESTPEGKKTPVHPPVESDSDFFNDDVISKPPRTPGRTSSDD
QIESKENEKPTEKIIDRSSPPSRRKSPEFNDRVYSDSEEEREYQERIRRNTEWMEQIERE
AKEEMERQKQLKEQQKDDNVISNEYKKRALSPIVEKKLEIKKSSFDEPFTPTTKLPPPTP
GANTSIQTNIDLLKKDNDQEIVKKKRGRPKGSLGKPKELKEKEKKEKIKNGTISKIDEKL
FAQPQQMEQKYSLKLSPSSSSDGGSSQASLVAMEHCYSLPPSASPSTSSSPNQEMVQAVR
HLDHDHGYYGKSDSVPLQTIQPAQLEEQSKKDAPLHPRPVGRPRKDPNAPKAQYTKRDKT
GLPIEKQSKIKEKEKVQKIDLKQHQMMVDSYVPKAKYNKRQQNEEFDVLCQFLTQGIDQE
DVDYMKRAYTYLIQNDIPGTELLHQVHWVDHCATDRSFMPSEPKKRKRDNLPELRQHVTG
CARTEGFYKIDSKEKAHYKYHHLKGTAAGSHLETAKVAAKMQSASREARSNQRRLLTAFG
GATESDLLKFNQLKFRKKQLKFAKSAIHDWGLFAMEPIAADEMVIEYVGQMVRPSIADLR
ESKYEAIGIGSSYLFRIDLETIIDATKCGNLARFINHSCNPNCYAKVITIESEKKIVIYS
KQPIGVNEEITYDYKFPLEDEKIPCLCGAAGCRVNQLTNVYYDECRSQIFIVKSASISVK
SLDSKNGNFSFNLQSNNANLIAIKFSENNNVLAVQRTENNLELIGFKNNQLQPNQIIYYE
TKQKQGTIIYGFIWTEHDEFLIVTADYVEIFQINMAKRQMKSLKSLSVSSNFFCYRSNFL
LLSSNNGLILTPILIKQGSLTKLSPIQIEDGQSITERDIVMAKIYNDPAILILKTTRNRT
LEIFVYLLEVPTFKKKHVLKLSLNGRCAISCIDSIIIVHHQTSKVSLLFDIALNEDTDPI
DKSVMIHHPLVLAKSIKPFCVKIPSVSLKNEVMNFELYSVNWVIFCDIIIDVKLGYLFQL
ELDITKVQIGDKIKLIDFLMHRQNAKIHLLSVLSQLITSDYEEINLPMLEIIFDKLNKVY
KQKLDYDMSKLEALPSPSGFKSFTTPSTSAIDKPKEAVVIEQNDILQIFNAIFDKSVLEK
ILMAYIYSLVKNSITCEYDLSKQIVVTLIGNDKIYDLQQILSFQILLESKPLACFLLSLA
NHDPLISQMSLDMLKRLGAHEIIIEILLEQGKVIDAMRLAKQHTNIDHVPARKFLEAAMK
DDNKMTFYSIYNFFISRNQRLRGNNEFLKSEQCDNFVRIFEQLFPSATA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g2918.t1 | CDD | cd19169 | SET_SETD1 | 1506 | 1653 | 6.97196E-110 |
| 10 | g2918.t1 | Coils | Coil | Coil | 1074 | 1098 | - |
| 9 | g2918.t1 | Gene3D | G3DSA:3.30.70.330 | - | 87 | 193 | 1.3E-15 |
| 8 | g2918.t1 | Gene3D | G3DSA:2.170.270.10 | SET domain | 1425 | 1646 | 1.0E-52 |
| 29 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - |
| 40 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - |
| 26 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 353 | - |
| 27 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 369 | - |
| 17 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 369 | - |
| 22 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 418 | - |
| 28 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 437 | - |
| 20 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 437 | - |
| 21 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 525 | - |
| 36 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 508 | - |
| 19 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 525 | - |
| 34 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 562 | - |
| 14 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 562 | - |
| 25 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 604 | - |
| 39 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 781 | - |
| 31 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 1268 | - |
| 32 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 835 | - |
| 23 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 851 | 875 | - |
| 30 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 876 | 890 | - |
| 24 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 908 | 927 | - |
| 18 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 1004 | - |
| 16 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1018 | 1124 | - |
| 38 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1153 | 1194 | - |
| 15 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1205 | 1232 | - |
| 35 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1240 | 1256 | - |
| 37 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1286 | 1326 | - |
| 33 | g2918.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1289 | 1326 | - |
| 4 | g2918.t1 | PANTHER | PTHR45814 | HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 | 22 | 1156 | 8.7E-218 |
| 5 | g2918.t1 | PANTHER | PTHR45814 | HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 | 1018 | 1653 | 8.7E-218 |
| 1 | g2918.t1 | Pfam | PF11764 | COMPASS (Complex proteins associated with Set1p) component N | 1373 | 1512 | 1.6E-23 |
| 2 | g2918.t1 | Pfam | PF00856 | SET domain | 1530 | 1634 | 1.2E-17 |
| 3 | g2918.t1 | Pfam | PF07035 | Colon cancer-associated protein Mic1-like | 2095 | 2249 | 8.2E-53 |
| 41 | g2918.t1 | ProSiteProfiles | PS50280 | SET domain profile. | 1518 | 1635 | 16.535 |
| 42 | g2918.t1 | ProSiteProfiles | PS50868 | Post-SET domain profile. | 1641 | 1653 | 8.364 |
| 12 | g2918.t1 | SMART | SM01291 | N_SET_2 | 1361 | 1508 | 1.6E-46 |
| 13 | g2918.t1 | SMART | SM00317 | set_7 | 1518 | 1641 | 3.4E-36 |
| 6 | g2918.t1 | SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 74 | 168 | 3.44E-10 |
| 7 | g2918.t1 | SUPERFAMILY | SSF82199 | SET domain | 1514 | 1653 | 2.88E-44 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0003676 | nucleic acid binding | MF |
KEGG
Orthology
- This transcript has been annotated with K11422 ([histone H3]-lysine4 N-trimethyltransferase SETD1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
