Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2918 g2918.t2 isoform g2918.t2 21246533 21247969
chr_3 g2918 g2918.t2 exon g2918.t2.exon1 21246533 21247969
chr_3 g2918 g2918.t2 cds g2918.t2.CDS1 21247095 21247967
chr_3 g2918 g2918.t2 TTS g2918.t2 21248507 21248507
chr_3 g2918 g2918.t2 TSS g2918.t2 NA NA

Sequences

>g2918.t2 Gene=g2918 Length=1437
ATATAATTCACATCGAAGTTCAAAATATGACGATGATTATGAATATTCTCGCAGTAGTAG
CAAATATGATAAATATGATCGAAAAGAGAGAGATTATGGTGGTAGTAGGTATGATAGACA
CAGAAGGGACAGAGATCGTGATCGAGACAGACGGTCAGACTATAGAAGTAAAGATGATTG
GAAAGATCGAGATAGAGACAGAGATCGTGAAAGGTCGCGAAAAGATAGAGATTATTATGA
ATATTCATCAAGAAGTGAAAAGGATCATCATCGGTATAGTGGATATAGTAAAAGTTATTC
AAGAACAGAATCTTATAGTTCCTCTTCTGCTGAAGCTGCATATTCAAATTATGATTCATA
TAGTTATTCAAATTATCCAAATTACGGTCCATATCCACCGTATCAAACACCAATTGCTTC
TTCAAATTGGGCACCTCCACCTCCTCCTAAAGAAGATTCACCTTTGTCAAAACCACCACC
TCCATCTGATGACTTAGAAACACGTGAAAAAATCAAAAAAGAGGATGACGAAACAGAAGT
TGATCTCGACACTAGAATCGCCATGTTGTTCAATGCAAAATCATTTGGTTCTGAACCGCC
TTCATTATTTAATAATTTAGATGATGGTGAAACAAAGACAGAAGAATCGATTGATGATAT
AGAAAGTCGATCAAATGATTGTAGTGACTCAAATTTACATCGAAAATTAAAATCACATCT
GAAAATTGAGGAAAATGATGAAGAGTCATCACGATCTAGTGCCAATAAAAATTTTAGCAA
TAATAATAATGACATCGATATGACATTAGTGAAAATTGAAAATGAAGTGAAAGTTGAAAT
AAAAGAGGAAGGTGAGTTAAATGATGCAAATTCTTCATCTGACGAGAGTGCAATCAGCAG
CATACCGAGTCCATTTGAATCACGGAAAAGTTTTAAAGTAAATCGAAAATATCTACTTAT
TAACAAAAGAAAACGATCGAAAGAGAAAAAGGTGAAAGTTGATTCTGGAGCAAGTGATAT
TTCATCAAGTGAGGACGAATTGTTAGCCAAAGGAAGTTACAGTCCTACACTGCCATATAG
AGGAGATGGAGATACAAAAATTAAAGATGATGATCAAATGTCACTTTCAAGCTTATCATC
TACTGAACCTATTATTAATAATGATCAGGATGTTAAGGTAGACGAAAAGAGTTTTGATGC
ATCCTCTGTTGCTTACATGTATCCAATGGGATTTTCATCTTATCCAAATTATTATTATCA
ACAACAATCATTTCATCAATTTCAACAACCACATTGGAATTATGATGCATCAGCATATTA
TTCAAATTATAAGAAATCTGAAAAGGATCTTACAACGGAGCCAGATGATCCACATGAAGC
TGCATGTAAAAAAGTTATTGAAAAATTAATTCAGGAACTCAAGCAAATTCTTAAAAA

>g2918.t2 Gene=g2918 Length=291
MLFNAKSFGSEPPSLFNNLDDGETKTEESIDDIESRSNDCSDSNLHRKLKSHLKIEENDE
ESSRSSANKNFSNNNNDIDMTLVKIENEVKVEIKEEGELNDANSSSDESAISSIPSPFES
RKSFKVNRKYLLINKRKRSKEKKVKVDSGASDISSSEDELLAKGSYSPTLPYRGDGDTKI
KDDDQMSLSSLSSTEPIINNDQDVKVDEKSFDASSVAYMYPMGFSSYPNYYYQQQSFHQF
QQPHWNYDASAYYSNYKKSEKDLTTEPDDPHEAACKKVIEKLIQELKQILK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g2918.t2 Coils Coil Coil 276 291 -
4 g2918.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 78 -
3 g2918.t2 MobiDBLite mobidb-lite consensus disorder prediction 21 64 -
1 g2918.t2 MobiDBLite mobidb-lite consensus disorder prediction 96 118 -
2 g2918.t2 MobiDBLite mobidb-lite consensus disorder prediction 103 118 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed