Gene loci information

Transcript annotation

  • This transcript has been annotated as Inositol-3-phosphate synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2924 g2924.t11 TTS g2924.t11 21259729 21259729
chr_3 g2924 g2924.t11 isoform g2924.t11 21259921 21267046
chr_3 g2924 g2924.t11 exon g2924.t11.exon1 21259921 21261459
chr_3 g2924 g2924.t11 cds g2924.t11.CDS1 21259921 21261459
chr_3 g2924 g2924.t11 exon g2924.t11.exon2 21266937 21267046
chr_3 g2924 g2924.t11 cds g2924.t11.CDS2 21266937 21266942
chr_3 g2924 g2924.t11 TSS g2924.t11 21267855 21267855

Sequences

>g2924.t11 Gene=g2924 Length=1649
ACACACAACAAGCGAAAACAGCGCCACTCTCTCTTACGGAAAATCGTAATGAAAACTTTA
GAGCAGTGAAAAGGTCGTATGAAGGAGAAGAGAAAAAGAGAGACATGACAGTTCATCCGA
TTACGAAGAGAATTGATATACGAACGGAGCGAAATGTACCAAAGCTAGGTCTGATGTTAG
TGGGTATGGGTGGAAATAATGGATCAACTCTCATTGCTGCTCTTGAAGCTAATCGTCAAA
AATTGACATGGCGCACAAAAGAAGGTCTAAAAGAAGCTAATTGGTTTGGATCGATCACTC
AATCAGCAACAGTTTTACTTGGTTCAGACTTTGAGGGCAAAGATGTTTATGCACCAATGA
ATGAATTTGTTCCAATGGTCAATCCTGAAAATATTATTGTTGATGGTTGGGATATCAGTT
CAATGAATATTGGTGATGCTATGAGGCGGGCAAAAGTATTAGATGTCAACTTGCAAGATC
AACTTTATAAAAAACTCTCACAAATTTCTCCTCGACCATCGATTTATTTTCCAGACTTTA
TTGCTGCTAATCAATTAGATCGTGCTGACAACTTGATTTTAGGCACCAAGTACGAACAGT
TTATGAAAATTCGCGATGACATTCGTGAGTTTAAAAAGACCAATGAAGTTGATAAGGTTG
TTGTTTTATGGACAGCTAATACTGAACGTTTTTGTGATGTACGTGAGGGTTTGAATTCTA
CTATGCAAGAATTAGAGACGTCATTGAAAAATAATGAGAGCGAAATCTCACCATCAACTA
TTTTTGCTATGGCTGCAATTTTGGAAGGATGCATTTACATTAATGGTTCACCGCAAAATA
CTTTTGTGCCTGGAGTAATCGAAATGGCTGAAAAATATGGAGCTTTCATTGCTGGTGATG
ATTTTAAATCAGGACAAACAAAATTAAAATCAGTACTTGTTGATTTTCTTGTTGGAGCCG
GTATCAAACCTGTCTCTATTGTCAGCTACAATCATTTGGGCAATAATGACGGAAAGAATC
TCAATTCACCATCACAATTTCGCTCAAAAGAAATTTCAAAGAGTAATGTTGTGGATGATA
TGGTTGAAAGCAATGAAATTTTATACAAGCCAAAGGAGCATCCAGATCATTGCGTTGTTA
TCAAGTATGTGCCATATGTTGGTGATAGCAAGCGCGCAATGGATGAATACACGAGCGAAA
TAATGATGGGTGGACATAACACACTTGTAATTCATAACACATGCGAAGATTCACTCTTGG
CAACTCCATTAATTCTTGATCTCGTTATTTTGGGCGAATTGTGTTCACGAATTAAAATCA
GAGATCATACCAAATCAGATGCCAAATTTGAGTCGTGCAAATCAGTTCTTTCTCTTCTAT
CATATTTATGTAAAGCACCACTTGTACCAAAAGGAAGTCAAGTTGTTAATTCACTATTTC
GTCAACGTGCTGCTATTGAAAACATTTTGAGAGCTTGTGTCGGCTTGTCTCCAAACAGTC
ATATGGCACTTGAACATAGATTTGATTTTTCATCCATTCCAATCAATCAAAAAACTGTCG
AATCAAGTTTAAAATTAAATGGCTATACAAATGGATTTCATGAAGAAAAAACATCAAATG
GAATTGTTGTCGAGAATGGCATACATTAA

>g2924.t11 Gene=g2924 Length=514
MTVHPITKRIDIRTERNVPKLGLMLVGMGGNNGSTLIAALEANRQKLTWRTKEGLKEANW
FGSITQSATVLLGSDFEGKDVYAPMNEFVPMVNPENIIVDGWDISSMNIGDAMRRAKVLD
VNLQDQLYKKLSQISPRPSIYFPDFIAANQLDRADNLILGTKYEQFMKIRDDIREFKKTN
EVDKVVVLWTANTERFCDVREGLNSTMQELETSLKNNESEISPSTIFAMAAILEGCIYIN
GSPQNTFVPGVIEMAEKYGAFIAGDDFKSGQTKLKSVLVDFLVGAGIKPVSIVSYNHLGN
NDGKNLNSPSQFRSKEISKSNVVDDMVESNEILYKPKEHPDHCVVIKYVPYVGDSKRAMD
EYTSEIMMGGHNTLVIHNTCEDSLLATPLILDLVILGELCSRIKIRDHTKSDAKFESCKS
VLSLLSYLCKAPLVPKGSQVVNSLFRQRAAIENILRACVGLSPNSHMALEHRFDFSSIPI
NQKTVESSLKLNGYTNGFHEEKTSNGIVVENGIH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g2924.t11 Coils Coil Coil 200 220 -
7 g2924.t11 Gene3D G3DSA:3.40.50.720 - 2 470 4.4E-240
8 g2924.t11 Gene3D G3DSA:3.30.360.10 Dihydrodipicolinate Reductase; domain 2 276 388 4.4E-240
3 g2924.t11 PANTHER PTHR11510:SF5 INOSITOL-3-PHOSPHATE SYNTHASE 1 2 472 2.4E-245
4 g2924.t11 PANTHER PTHR11510 MYO-INOSITOL-1 PHOSPHATE SYNTHASE 2 472 2.4E-245
10 g2924.t11 PIRSF PIRSF015578 Myoinositol-ppht_synth 9 473 3.5E-188
2 g2924.t11 Pfam PF07994 Myo-inositol-1-phosphate synthase 21 456 3.5E-139
1 g2924.t11 Pfam PF01658 Myo-inositol-1-phosphate synthase 270 383 6.4E-44
5 g2924.t11 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 2 472 7.32E-147
6 g2924.t11 SUPERFAMILY SSF55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 269 382 1.7E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008654 phospholipid biosynthetic process BP
GO:0006021 inositol biosynthetic process BP
GO:0004512 inositol-3-phosphate synthase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values