General information for g2924.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Inositol-3-phosphate synthase.
Parent gene
- The parent gene g2924 is located on chr_3: 21259921..21267778 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2924 | g2924.t3 | isoform | g2924.t3 | 21259660 | 21261294 |
| chr_3 | g2924 | g2924.t3 | exon | g2924.t3.exon1 | 21259660 | 21261294 |
| chr_3 | g2924 | g2924.t3 | cds | g2924.t3.CDS1 | 21259921 | 21261213 |
| chr_3 | g2924 | g2924.t3 | TSS | g2924.t3 | NA | NA |
| chr_3 | g2924 | g2924.t3 | TTS | g2924.t3 | NA | NA |
Sequences
>g2924.t3 Gene=g2924 Length=1635
GCTAATTGGTTTGGATCGATCACTCAATCAGCAACAGTTTTACTTGGTTCAGACTTTGAG
GGCAAAGATGTTTATGCACCAATGAATGAATTTGTTCCAATGGTCAATCCTGAAAATATT
ATTGTTGATGGTTGGGATATCAGTTCAATGAATATTGGTGATGCTATGAGGCGGGCAAAA
GTATTAGATGTCAACTTGCAAGATCAACTTTATAAAAAACTCTCACAAATTTCTCCTCGA
CCATCGATTTATTTTCCAGACTTTATTGCTGCTAATCAATTAGATCGTGCTGACAACTTG
ATTTTAGGCACCAAGTACGAACAGTTTATGAAAATTCGCGATGACATTCGTGAGTTTAAA
AAGACCAATGAAGTTGATAAGGTTGTTGTTTTATGGACAGCTAATACTGAACGTTTTTGT
GATGTACGTGAGGGTTTGAATTCTACTATGCAAGAATTAGAGACGTCATTGAAAAATAAT
GAGAGCGAAATCTCACCATCAACTATTTTTGCTATGGCTGCAATTTTGGAAGGATGCATT
TACATTAATGGTTCACCGCAAAATACTTTTGTGCCTGGAGTAATCGAAATGGCTGAAAAA
TATGGAGCTTTCATTGCTGGTGATGATTTTAAATCAGGACAAACAAAATTAAAATCAGTA
CTTGTTGATTTTCTTGTTGGAGCCGGTATCAAACCTGTCTCTATTGTCAGCTACAATCAT
TTGGGCAATAATGACGGAAAGAATCTCAATTCACCATCACAATTTCGCTCAAAAGAAATT
TCAAAGAGTAATGTTGTGGATGATATGGTTGAAAGCAATGAAATTTTATACAAGCCAAAG
GAGCATCCAGATCATTGCGTTGTTATCAAGTATGTGCCATATGTTGGTGATAGCAAGCGC
GCAATGGATGAATACACGAGCGAAATAATGATGGGTGGACATAACACACTTGTAATTCAT
AACACATGCGAAGATTCACTCTTGGCAACTCCATTAATTCTTGATCTCGTTATTTTGGGC
GAATTGTGTTCACGAATTAAAATCAGAGATCATACCAAATCAGATGCCAAATTTGAGTCG
TGCAAATCAGTTCTTTCTCTTCTATCATATTTATGTAAAGCACCACTTGTACCAAAAGGA
AGTCAAGTTGTTAATTCACTATTTCGTCAACGTGCTGCTATTGAAAACATTTTGAGAGCT
TGTGTCGGCTTGTCTCCAAACAGTCATATGGCACTTGAACATAGATTTGATTTTTCATCC
ATTCCAATCAATCAAAAAACTGTCGAATCAAGTTTAAAATTAAATGGCTATACAAATGGA
TTTCATGAAGAAAAAACATCAAATGGAATTGTTGTCGAGAATGGCATACATTAAAGAAAT
TTATAAGCATATTCCCGTCCGTTTTGCAGCAATAATGATACTAATAATATATTTTGTACC
CATATATATGTATTTCTGTAATTGTCTTGTAATCGAAAAAATATTTTTTTTATTAAAATT
CAAATATTTACATAATGTAACATAGAACAGAGATTTGATGATGGAAATAAATGAGTGACA
TTGAAAAAAAGAATCTTTTTTGAGTAGAATCAACGTTTTGAATTAGGGTAAATGTTCCTA
ATTCGGGACACTTTT
>g2924.t3 Gene=g2924 Length=430
MNEFVPMVNPENIIVDGWDISSMNIGDAMRRAKVLDVNLQDQLYKKLSQISPRPSIYFPD
FIAANQLDRADNLILGTKYEQFMKIRDDIREFKKTNEVDKVVVLWTANTERFCDVREGLN
STMQELETSLKNNESEISPSTIFAMAAILEGCIYINGSPQNTFVPGVIEMAEKYGAFIAG
DDFKSGQTKLKSVLVDFLVGAGIKPVSIVSYNHLGNNDGKNLNSPSQFRSKEISKSNVVD
DMVESNEILYKPKEHPDHCVVIKYVPYVGDSKRAMDEYTSEIMMGGHNTLVIHNTCEDSL
LATPLILDLVILGELCSRIKIRDHTKSDAKFESCKSVLSLLSYLCKAPLVPKGSQVVNSL
FRQRAAIENILRACVGLSPNSHMALEHRFDFSSIPINQKTVESSLKLNGYTNGFHEEKTS
NGIVVENGIH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2924.t3 | Coils | Coil | Coil | 116 | 136 | - |
| 7 | g2924.t3 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 386 | 1.1E-200 |
| 8 | g2924.t3 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 192 | 304 | 1.1E-200 |
| 3 | g2924.t3 | PANTHER | PTHR11510:SF5 | INOSITOL-3-PHOSPHATE SYNTHASE 1 | 2 | 388 | 1.9E-207 |
| 4 | g2924.t3 | PANTHER | PTHR11510 | MYO-INOSITOL-1 PHOSPHATE SYNTHASE | 2 | 388 | 1.9E-207 |
| 10 | g2924.t3 | PIRSF | PIRSF015578 | Myoinositol-ppht_synth | 1 | 389 | 9.8E-175 |
| 2 | g2924.t3 | Pfam | PF07994 | Myo-inositol-1-phosphate synthase | 1 | 372 | 2.1E-109 |
| 1 | g2924.t3 | Pfam | PF01658 | Myo-inositol-1-phosphate synthase | 186 | 299 | 4.6E-44 |
| 5 | g2924.t3 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 388 | 5.75E-112 |
| 6 | g2924.t3 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 185 | 298 | 1.24E-41 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008654 | phospholipid biosynthetic process | BP |
| GO:0006021 | inositol biosynthetic process | BP |
| GO:0004512 | inositol-3-phosphate synthase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
