General information for g2924.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Inositol-3-phosphate synthase.
Parent gene
- The parent gene g2924 is located on chr_3: 21259921..21267778 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2924 | g2924.t4 | TTS | g2924.t4 | 21259729 | 21259729 |
| chr_3 | g2924 | g2924.t4 | isoform | g2924.t4 | 21259921 | 21261294 |
| chr_3 | g2924 | g2924.t4 | exon | g2924.t4.exon1 | 21259921 | 21260374 |
| chr_3 | g2924 | g2924.t4 | cds | g2924.t4.CDS1 | 21260351 | 21260374 |
| chr_3 | g2924 | g2924.t4 | exon | g2924.t4.exon2 | 21260449 | 21261294 |
| chr_3 | g2924 | g2924.t4 | cds | g2924.t4.CDS2 | 21260449 | 21261213 |
| chr_3 | g2924 | g2924.t4 | TSS | g2924.t4 | NA | NA |
Sequences
>g2924.t4 Gene=g2924 Length=1300
GCTAATTGGTTTGGATCGATCACTCAATCAGCAACAGTTTTACTTGGTTCAGACTTTGAG
GGCAAAGATGTTTATGCACCAATGAATGAATTTGTTCCAATGGTCAATCCTGAAAATATT
ATTGTTGATGGTTGGGATATCAGTTCAATGAATATTGGTGATGCTATGAGGCGGGCAAAA
GTATTAGATGTCAACTTGCAAGATCAACTTTATAAAAAACTCTCACAAATTTCTCCTCGA
CCATCGATTTATTTTCCAGACTTTATTGCTGCTAATCAATTAGATCGTGCTGACAACTTG
ATTTTAGGCACCAAGTACGAACAGTTTATGAAAATTCGCGATGACATTCGTGAGTTTAAA
AAGACCAATGAAGTTGATAAGGTTGTTGTTTTATGGACAGCTAATACTGAACGTTTTTGT
GATGTACGTGAGGGTTTGAATTCTACTATGCAAGAATTAGAGACGTCATTGAAAAATAAT
GAGAGCGAAATCTCACCATCAACTATTTTTGCTATGGCTGCAATTTTGGAAGGATGCATT
TACATTAATGGTTCACCGCAAAATACTTTTGTGCCTGGAGTAATCGAAATGGCTGAAAAA
TATGGAGCTTTCATTGCTGGTGATGATTTTAAATCAGGACAAACAAAATTAAAATCAGTA
CTTGTTGATTTTCTTGTTGGAGCCGGTATCAAACCTGTCTCTATTGTCAGCTACAATCAT
TTGGGCAATAATGACGGAAAGAATCTCAATTCACCATCACAATTTCGCTCAAAAGAAATT
TCAAAGAGTAATGTTGTGGATGATATGGTTGAAAGCAATGAAATTTTATACAAGCCAAAG
GAGCATCGAAATAATGATGGGTGGACATAACACACTTGTAATTCATAACACATGCGAAGA
TTCACTCTTGGCAACTCCATTAATTCTTGATCTCGTTATTTTGGGCGAATTGTGTTCACG
AATTAAAATCAGAGATCATACCAAATCAGATGCCAAATTTGAGTCGTGCAAATCAGTTCT
TTCTCTTCTATCATATTTATGTAAAGCACCACTTGTACCAAAAGGAAGTCAAGTTGTTAA
TTCACTATTTCGTCAACGTGCTGCTATTGAAAACATTTTGAGAGCTTGTGTCGGCTTGTC
TCCAAACAGTCATATGGCACTTGAACATAGATTTGATTTTTCATCCATTCCAATCAATCA
AAAAACTGTCGAATCAAGTTTAAAATTAAATGGCTATACAAATGGATTTCATGAAGAAAA
AACATCAAATGGAATTGTTGTCGAGAATGGCATACATTAA
>g2924.t4 Gene=g2924 Length=262
MNEFVPMVNPENIIVDGWDISSMNIGDAMRRAKVLDVNLQDQLYKKLSQISPRPSIYFPD
FIAANQLDRADNLILGTKYEQFMKIRDDIREFKKTNEVDKVVVLWTANTERFCDVREGLN
STMQELETSLKNNESEISPSTIFAMAAILEGCIYINGSPQNTFVPGVIEMAEKYGAFIAG
DDFKSGQTKLKSVLVDFLVGAGIKPVSIVSYNHLGNNDGKNLNSPSQFRSKEISKSNVVD
DMVESNEILYKPKEHRNNDGWT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2924.t4 | Coils | Coil | Coil | 116 | 136 | - |
| 6 | g2924.t4 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 183 | 8.1E-74 |
| 7 | g2924.t4 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 185 | 259 | 3.3E-35 |
| 3 | g2924.t4 | PANTHER | PTHR11510 | MYO-INOSITOL-1 PHOSPHATE SYNTHASE | 2 | 256 | 3.4E-132 |
| 9 | g2924.t4 | PIRSF | PIRSF015578 | Myoinositol-ppht_synth | 1 | 259 | 7.6E-117 |
| 2 | g2924.t4 | Pfam | PF07994 | Myo-inositol-1-phosphate synthase | 1 | 185 | 2.9E-81 |
| 1 | g2924.t4 | Pfam | PF01658 | Myo-inositol-1-phosphate synthase | 186 | 251 | 2.0E-25 |
| 4 | g2924.t4 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 184 | 1.1E-76 |
| 5 | g2924.t4 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 185 | 259 | 2.49E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008654 | phospholipid biosynthetic process | BP |
| GO:0006021 | inositol biosynthetic process | BP |
| GO:0004512 | inositol-3-phosphate synthase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
