Gene loci information

Transcript annotation

  • This transcript has been annotated as Inositol-3-phosphate synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2924 g2924.t6 TTS g2924.t6 21259729 21259729
chr_3 g2924 g2924.t6 isoform g2924.t6 21259921 21262786
chr_3 g2924 g2924.t6 exon g2924.t6.exon1 21259921 21261459
chr_3 g2924 g2924.t6 cds g2924.t6.CDS1 21259921 21261459
chr_3 g2924 g2924.t6 exon g2924.t6.exon2 21262529 21262657
chr_3 g2924 g2924.t6 cds g2924.t6.CDS2 21262529 21262630
chr_3 g2924 g2924.t6 exon g2924.t6.exon3 21262748 21262786
chr_3 g2924 g2924.t6 TSS g2924.t6 21262786 21262786

Sequences

>g2924.t6 Gene=g2924 Length=1707
AGTTCTCGCTCGTATTTCGTTGTGTTCGGTTGTGATCTGAAATTTAGTAAACTACATACC
TAAAAAATGGAAATATCATCACCAAATGTGAAATATTCAGAAAATTTTATTGATACCGTT
TATGATTACAACACTACTTTTGTGGAAAAATCTAATGGAAAATTACTAGTTCATCCGATT
ACGAAGAGAATTGATATACGAACGGAGCGAAATGTACCAAAGCTAGGTCTGATGTTAGTG
GGTATGGGTGGAAATAATGGATCAACTCTCATTGCTGCTCTTGAAGCTAATCGTCAAAAA
TTGACATGGCGCACAAAAGAAGGTCTAAAAGAAGCTAATTGGTTTGGATCGATCACTCAA
TCAGCAACAGTTTTACTTGGTTCAGACTTTGAGGGCAAAGATGTTTATGCACCAATGAAT
GAATTTGTTCCAATGGTCAATCCTGAAAATATTATTGTTGATGGTTGGGATATCAGTTCA
ATGAATATTGGTGATGCTATGAGGCGGGCAAAAGTATTAGATGTCAACTTGCAAGATCAA
CTTTATAAAAAACTCTCACAAATTTCTCCTCGACCATCGATTTATTTTCCAGACTTTATT
GCTGCTAATCAATTAGATCGTGCTGACAACTTGATTTTAGGCACCAAGTACGAACAGTTT
ATGAAAATTCGCGATGACATTCGTGAGTTTAAAAAGACCAATGAAGTTGATAAGGTTGTT
GTTTTATGGACAGCTAATACTGAACGTTTTTGTGATGTACGTGAGGGTTTGAATTCTACT
ATGCAAGAATTAGAGACGTCATTGAAAAATAATGAGAGCGAAATCTCACCATCAACTATT
TTTGCTATGGCTGCAATTTTGGAAGGATGCATTTACATTAATGGTTCACCGCAAAATACT
TTTGTGCCTGGAGTAATCGAAATGGCTGAAAAATATGGAGCTTTCATTGCTGGTGATGAT
TTTAAATCAGGACAAACAAAATTAAAATCAGTACTTGTTGATTTTCTTGTTGGAGCCGGT
ATCAAACCTGTCTCTATTGTCAGCTACAATCATTTGGGCAATAATGACGGAAAGAATCTC
AATTCACCATCACAATTTCGCTCAAAAGAAATTTCAAAGAGTAATGTTGTGGATGATATG
GTTGAAAGCAATGAAATTTTATACAAGCCAAAGGAGCATCCAGATCATTGCGTTGTTATC
AAGTATGTGCCATATGTTGGTGATAGCAAGCGCGCAATGGATGAATACACGAGCGAAATA
ATGATGGGTGGACATAACACACTTGTAATTCATAACACATGCGAAGATTCACTCTTGGCA
ACTCCATTAATTCTTGATCTCGTTATTTTGGGCGAATTGTGTTCACGAATTAAAATCAGA
GATCATACCAAATCAGATGCCAAATTTGAGTCGTGCAAATCAGTTCTTTCTCTTCTATCA
TATTTATGTAAAGCACCACTTGTACCAAAAGGAAGTCAAGTTGTTAATTCACTATTTCGT
CAACGTGCTGCTATTGAAAACATTTTGAGAGCTTGTGTCGGCTTGTCTCCAAACAGTCAT
ATGGCACTTGAACATAGATTTGATTTTTCATCCATTCCAATCAATCAAAAAACTGTCGAA
TCAAGTTTAAAATTAAATGGCTATACAAATGGATTTCATGAAGAAAAAACATCAAATGGA
ATTGTTGTCGAGAATGGCATACATTAA

>g2924.t6 Gene=g2924 Length=546
MEISSPNVKYSENFIDTVYDYNTTFVEKSNGKLLVHPITKRIDIRTERNVPKLGLMLVGM
GGNNGSTLIAALEANRQKLTWRTKEGLKEANWFGSITQSATVLLGSDFEGKDVYAPMNEF
VPMVNPENIIVDGWDISSMNIGDAMRRAKVLDVNLQDQLYKKLSQISPRPSIYFPDFIAA
NQLDRADNLILGTKYEQFMKIRDDIREFKKTNEVDKVVVLWTANTERFCDVREGLNSTMQ
ELETSLKNNESEISPSTIFAMAAILEGCIYINGSPQNTFVPGVIEMAEKYGAFIAGDDFK
SGQTKLKSVLVDFLVGAGIKPVSIVSYNHLGNNDGKNLNSPSQFRSKEISKSNVVDDMVE
SNEILYKPKEHPDHCVVIKYVPYVGDSKRAMDEYTSEIMMGGHNTLVIHNTCEDSLLATP
LILDLVILGELCSRIKIRDHTKSDAKFESCKSVLSLLSYLCKAPLVPKGSQVVNSLFRQR
AAIENILRACVGLSPNSHMALEHRFDFSSIPINQKTVESSLKLNGYTNGFHEEKTSNGIV
VENGIH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2924.t6 Coils Coil Coil 232 252 -
6 g2924.t6 Gene3D G3DSA:3.40.50.720 - 9 502 2.1E-246
7 g2924.t6 Gene3D G3DSA:3.30.360.10 Dihydrodipicolinate Reductase; domain 2 308 420 2.1E-246
3 g2924.t6 PANTHER PTHR11510 MYO-INOSITOL-1 PHOSPHATE SYNTHASE 2 504 5.5E-254
9 g2924.t6 PIRSF PIRSF015578 Myoinositol-ppht_synth 41 505 4.3E-188
2 g2924.t6 Pfam PF07994 Myo-inositol-1-phosphate synthase 53 488 4.4E-139
1 g2924.t6 Pfam PF01658 Myo-inositol-1-phosphate synthase 302 415 7.0E-44
4 g2924.t6 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 3 504 1.65E-154
5 g2924.t6 SUPERFAMILY SSF55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 301 414 1.83E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008654 phospholipid biosynthetic process BP
GO:0006021 inositol biosynthetic process BP
GO:0004512 inositol-3-phosphate synthase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values