General information for g2939.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Multiple inositol polyphosphate phosphatase 1.
Parent gene
- The parent gene g2939 is located on chr_3: 21368181..21369349 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2939 | g2939.t1 | isoform | g2939.t1 | 21368181 | 21369349 |
| chr_3 | g2939 | g2939.t1 | exon | g2939.t1.exon1 | 21368181 | 21368301 |
| chr_3 | g2939 | g2939.t1 | cds | g2939.t1.CDS1 | 21368181 | 21368301 |
| chr_3 | g2939 | g2939.t1 | exon | g2939.t1.exon2 | 21368468 | 21368625 |
| chr_3 | g2939 | g2939.t1 | cds | g2939.t1.CDS2 | 21368468 | 21368625 |
| chr_3 | g2939 | g2939.t1 | exon | g2939.t1.exon3 | 21368680 | 21369094 |
| chr_3 | g2939 | g2939.t1 | cds | g2939.t1.CDS3 | 21368680 | 21369094 |
| chr_3 | g2939 | g2939.t1 | exon | g2939.t1.exon4 | 21369153 | 21369349 |
| chr_3 | g2939 | g2939.t1 | cds | g2939.t1.CDS4 | 21369153 | 21369349 |
| chr_3 | g2939 | g2939.t1 | TSS | g2939.t1 | NA | NA |
| chr_3 | g2939 | g2939.t1 | TTS | g2939.t1 | NA | NA |
Sequences
>g2939.t1 Gene=g2939 Length=891
ATGTTCACAATACTGGCAATAGTTCTTGCTTTCTCACAAGCAAGCGTCAGCTTACACGAT
CCATTTTACTGCTTTACAACTGATCCAATTCATCCACAAAATCAAATGTTTGCCACAAAA
GTTGTTTATGAAGCTCTTCATGGAAGAGAAATTCCAAATGTTTCAACTTGCACGCCAAGG
AAATTTTGGATGTACAGTCGCCATGGGACTCGTTTACCTTCATCAAGTGATATAAGAAGA
ATGATTGACATCCACGATAGATTGCAATCAAGTGTACTCAGAAATTACGATCTAGGACGA
ACACAATTATGTCGTGCTGATTATGAAAATATCGCTAACTGGATTTTTAATTCAACAAAC
CTCGATCCTGACAGAAATTCTGAGCTAGTTGAAGCGGGATGTGAAGAACTGAGAGGAATT
GCTCAAAGATTTCAAAAAGCTTTTCCAAATATTCTACCAAAAACTTACAATACCAGTGAA
TTTCTAATTAGATTTACAGACAGACAAAGAACACAGGCTAGTTTGGACGCATTTGCTGAA
GATTTATTTGATGAAGGCGCTCATAATGATATATTTTTTGAACCAGTTCCAGCTGTTGAC
AGATTATTAAGGCCCCACGACGATTGTCCACTTTATGATGAAGTCAGCTCAAATTTAGTT
GAACAAGAAGCCTTCGAAGAAGGACCAGATTTTCAACAGATACTTGAACAAGTTAACAAA
AACTTGGATTTTTCGGATCAAATCAACTTTCAAGTCGAGAAGTTCGCACGCTATTATTAT
GGAATGGGCTATGGAGGCCAAGAAAGACTCTTTTCAAATATGAACTGTCATATCATGCAC
GACCTTTTGACTTATCTTCAATCTACTAATCCAAATGATCAACTCGCTTAA
>g2939.t1 Gene=g2939 Length=296
MFTILAIVLAFSQASVSLHDPFYCFTTDPIHPQNQMFATKVVYEALHGREIPNVSTCTPR
KFWMYSRHGTRLPSSSDIRRMIDIHDRLQSSVLRNYDLGRTQLCRADYENIANWIFNSTN
LDPDRNSELVEAGCEELRGIAQRFQKAFPNILPKTYNTSEFLIRFTDRQRTQASLDAFAE
DLFDEGAHNDIFFEPVPAVDRLLRPHDDCPLYDEVSSNLVEQEAFEEGPDFQQILEQVNK
NLDFSDQINFQVEKFARYYYGMGYGGQERLFSNMNCHIMHDLLTYLQSTNPNDQLA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g2939.t1 | CDD | cd07040 | HP | 123 | 208 | 0.00814131 |
| 7 | g2939.t1 | Gene3D | G3DSA:3.40.50.1240 | - | 32 | 295 | 4.9E-32 |
| 2 | g2939.t1 | PANTHER | PTHR20963:SF48 | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE 1 | 5 | 226 | 6.3E-45 |
| 3 | g2939.t1 | PANTHER | PTHR20963 | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED | 5 | 226 | 6.3E-45 |
| 1 | g2939.t1 | Pfam | PF00328 | Histidine phosphatase superfamily (branch 2) | 66 | 189 | 2.9E-6 |
| 9 | g2939.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 10 | g2939.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 1 | - |
| 11 | g2939.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 2 | 12 | - |
| 12 | g2939.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 17 | - |
| 8 | g2939.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 296 | - |
| 4 | g2939.t1 | SUPERFAMILY | SSF53254 | Phosphoglycerate mutase-like | 35 | 294 | 1.08E-27 |
| 6 | g2939.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
| 5 | g2939.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed