General information for g2940.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Multiple inositol polyphosphate phosphatase 1.
Parent gene
- The parent gene g2940 is located on chr_3: 21369948..21371200 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2940 | g2940.t1 | TSS | g2940.t1 | 21369577 | 21369577 |
| chr_3 | g2940 | g2940.t1 | isoform | g2940.t1 | 21369618 | 21371200 |
| chr_3 | g2940 | g2940.t1 | exon | g2940.t1.exon1 | 21369618 | 21369792 |
| chr_3 | g2940 | g2940.t1 | cds | g2940.t1.CDS1 | 21369618 | 21369792 |
| chr_3 | g2940 | g2940.t1 | exon | g2940.t1.exon2 | 21369848 | 21369886 |
| chr_3 | g2940 | g2940.t1 | cds | g2940.t1.CDS2 | 21369848 | 21369886 |
| chr_3 | g2940 | g2940.t1 | exon | g2940.t1.exon3 | 21369944 | 21370619 |
| chr_3 | g2940 | g2940.t1 | cds | g2940.t1.CDS3 | 21369944 | 21370619 |
| chr_3 | g2940 | g2940.t1 | exon | g2940.t1.exon4 | 21370679 | 21370972 |
| chr_3 | g2940 | g2940.t1 | cds | g2940.t1.CDS4 | 21370679 | 21370972 |
| chr_3 | g2940 | g2940.t1 | exon | g2940.t1.exon5 | 21371029 | 21371200 |
| chr_3 | g2940 | g2940.t1 | cds | g2940.t1.CDS5 | 21371029 | 21371200 |
| chr_3 | g2940 | g2940.t1 | TTS | g2940.t1 | 21371270 | 21371270 |
Sequences
>g2940.t1 Gene=g2940 Length=1356
ATGTTGAAATTCATTTTGATTTTGAACGTTGTGCATGTGACTTTTTCAAGTGTTTCTCAA
CATGACCCTTTCTACTGTTATTCATCAGATCCAATCAGACCTCAAGTTGGAATGTTTGCT
ACTAAATCCTCATATGAGACAAATAGAGGTCGTTCGATTGATCCAAATGTGTCAGCATGT
ACACCTGCTAAATTTTGGCTTCTAAGTCGTCATGGCACGCGACTGCCTTCAAGAGGTGAT
ATTACCGGCATTTTAAACAACTATGAAAGACTTCATCGTGATGTCAGTGTTAACTATAAT
GCGGGTAGAACTTCTCTCTGTGCTAGTGATTTTAATTTACTTCAGAATTGGTCATTTGAT
ACAAATATCACACTAGATAAAGAACAATATTTGACAGTTTCCGGATGGAATGAACTTGAA
GGATTAGGACGAAGATATTCTGAAGCTTTTCCTACATTATTGCCAAGAAATTATTCAAGA
AATGACTTTTTATTTAGGCCAACTTACAAGCAAAGGACACAAGCAAGTTTAAAAGCATTT
GCTGATGGTATTTTTGGTCATGATGGCCACATTCAAGTTCAGTTTGAAGAAGTTCCCGAT
CCTGATTTTTTTCTTCGTCCACACGATAATTGTGAGCTTTACGATGAAGTTATTGCAAAT
AAAATTGAACAAGATGCATTTCGAGATGGACCAGATTTTCAACAAATGTTAACACAAGTC
AGTCAAAAGTTAGGGTTTCATGGATCAAGACAATTAAGAGAGAATGAAATTGATACAATA
GCAAATTTATGTAAATTTGAACAAATTTGGTTTTTAGATGAGCCATCACCATGGTGTGTT
GCTTTTTCAATCAGTAACCATGCAGTACTTGAATACCTTGAAGATTTAGATTACTTTTGG
AGAGTTGGTTATGGTTATAGAGATTTTCGAACACTTTTTGAGAACATGAATTGTTATTTA
ATGCAAGACTTATTGAATTTTGTCACTTCAAATAATCCCAATGATCACTTGGCTCGAATT
TATAGTACGCACTCGACAATTTTACAATTGATAATTGTCACATTGGGAGTGTTTGAAGAT
GAAGTTCAATTGACGCGTCATAATTTTGCTCAGCAGACTTTCAGACAGTGGAAAAGTTCT
CTTATTGCACCGATGGGAACGAATTTGGCAGTCATTAAATATTCATGTGCAGATGGTGAT
GATGATTTGCTATTTTTATTCAACGAGAAGCCACTTCATATCAATGGATGTCAACCGAAT
GGTCTGTGCAAGCAGTCATTGATTGTTGAGAGATTCAGTCACTTTATGAATGGTGATTGT
CGCCAAATCTTTTGCAGTAATAACAACCGGCGCTAA
>g2940.t1 Gene=g2940 Length=451
MLKFILILNVVHVTFSSVSQHDPFYCYSSDPIRPQVGMFATKSSYETNRGRSIDPNVSAC
TPAKFWLLSRHGTRLPSRGDITGILNNYERLHRDVSVNYNAGRTSLCASDFNLLQNWSFD
TNITLDKEQYLTVSGWNELEGLGRRYSEAFPTLLPRNYSRNDFLFRPTYKQRTQASLKAF
ADGIFGHDGHIQVQFEEVPDPDFFLRPHDNCELYDEVIANKIEQDAFRDGPDFQQMLTQV
SQKLGFHGSRQLRENEIDTIANLCKFEQIWFLDEPSPWCVAFSISNHAVLEYLEDLDYFW
RVGYGYRDFRTLFENMNCYLMQDLLNFVTSNNPNDHLARIYSTHSTILQLIIVTLGVFED
EVQLTRHNFAQQTFRQWKSSLIAPMGTNLAVIKYSCADGDDDLLFLFNEKPLHINGCQPN
GLCKQSLIVERFSHFMNGDCRQIFCSNNNRR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g2940.t1 | CDD | cd07061 | HP_HAP_like | 131 | 408 | 1.0111E-18 |
| 6 | g2940.t1 | Gene3D | G3DSA:3.40.50.1240 | - | 36 | 442 | 5.2E-72 |
| 2 | g2940.t1 | PANTHER | PTHR20963:SF48 | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE 1 | 6 | 447 | 2.7E-98 |
| 3 | g2940.t1 | PANTHER | PTHR20963 | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED | 6 | 447 | 2.7E-98 |
| 12 | g2940.t1 | PIRSF | PIRSF000894 | Acid_Ptase | 1 | 450 | 9.1E-62 |
| 1 | g2940.t1 | Pfam | PF00328 | Histidine phosphatase superfamily (branch 2) | 67 | 401 | 4.4E-17 |
| 8 | g2940.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 9 | g2940.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 10 | g2940.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 11 | g2940.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 7 | g2940.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 451 | - |
| 4 | g2940.t1 | SUPERFAMILY | SSF53254 | Phosphoglycerate mutase-like | 35 | 448 | 3.7E-53 |
| 5 | g2940.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 16 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016791 | phosphatase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed