General information for g2963.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2963 is located on chr_3: 21606424..21606880 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2963 | g2963.t3 | TSS | g2963.t3 | 21604744 | 21604744 |
| chr_3 | g2963 | g2963.t3 | isoform | g2963.t3 | 21604825 | 21605944 |
| chr_3 | g2963 | g2963.t3 | exon | g2963.t3.exon1 | 21604825 | 21604882 |
| chr_3 | g2963 | g2963.t3 | exon | g2963.t3.exon2 | 21605027 | 21605675 |
| chr_3 | g2963 | g2963.t3 | cds | g2963.t3.CDS1 | 21605204 | 21605675 |
| chr_3 | g2963 | g2963.t3 | exon | g2963.t3.exon3 | 21605740 | 21605793 |
| chr_3 | g2963 | g2963.t3 | cds | g2963.t3.CDS2 | 21605740 | 21605793 |
| chr_3 | g2963 | g2963.t3 | exon | g2963.t3.exon4 | 21605857 | 21605944 |
| chr_3 | g2963 | g2963.t3 | cds | g2963.t3.CDS3 | 21605857 | 21605942 |
| chr_3 | g2963 | g2963.t3 | TTS | g2963.t3 | 21606529 | 21606529 |
Sequences
>g2963.t3 Gene=g2963 Length=849
ATGCTTTCTAGGAAAAAGGACAAATCCTCCAAAACTGGTTTAGCAGGAAAATACATAAAT
AAAGTCACTTTTAGTCATAAATGTATGGACAACAAATACTGATCAAAAAAATACAAAATC
TAAAACTCGACAGAGCGAAGAAAAATCAAAATTAAGTATCAACAATGGTTCAACGAGCAG
TAGTAGTAATATTGGTCAAGGAAAATTTTTACAAAACTCATCGCTTGCCTTAAACATGCT
CGCGAGTCAAAAATATCATATGCAGCCAAGTAGTAGTTCATCAATAAATTCTGAACCATC
TTATTTTCATCGAACTCTTGCACATCATCATCATCCAATCAGCAATAATAACAGTGCACT
CGCGAGTGATAGTCAAAATAATTATGTAGAAATAGATACTCTAGAAACGTTTTTATCTGA
ACAACAGAATGAGCAGCAACAGCAATATTCAAATGCTCCGTATGAAATCAATAATTACAA
AGACAATAATCAACAAGTTTCAATCGACATGGCATTATCCTCTCCAATTTATGAAAATCA
AGCAGTAGTTCGACGATCTGAATCGCCTATTTATACAAATACAAATCATCAAAACTCATT
ATATTCGACATCACAAAACTTGTACTCAAATCTACCACCGAGCAATTCAAATACATCAGC
TTATGCAAATTTGCCTTCCAGTATCAGTTTAAATTTAGTTCCAGCAATTCGTAGCACGCC
ACAATTTAATGTGAACGTTGAAGAATTGCCATTACCTCCGGGCTGGTCAGTCGATTATAC
ATTAAAAGGAAGAAGAAAATATTATATTGACCACAATACTGCAACTACACATTGGTCTCA
TCCACTAGA
>g2963.t3 Gene=g2963 Length=204
MLASQKYHMQPSSSSSINSEPSYFHRTLAHHHHPISNNNSALASDSQNNYVEIDTLETFL
SEQQNEQQQQYSNAPYEINNYKDNNQQVSIDMALSSPIYENQAVVRRSESPIYTNTNHQN
SLYSTSQNLYSNLPPSNSNTSAYANLPSSISLNLVPAIRSTPQFNVNVEELPLPPGWSVD
YTLKGRRKYYIDHNTATTHWSHPL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2963.t3 | CDD | cd00201 | WW | 174 | 203 | 0.0000007 |
| 4 | g2963.t3 | Gene3D | G3DSA:2.20.70.10 | - | 166 | 204 | 0.0000000 |
| 2 | g2963.t3 | PANTHER | PTHR47522 | SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1 | 12 | 204 | 0.0000000 |
| 1 | g2963.t3 | Pfam | PF00397 | WW domain | 173 | 203 | 0.0000004 |
| 5 | g2963.t3 | ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 171 | 204 | 15.4270000 |
| 3 | g2963.t3 | SUPERFAMILY | SSF51045 | WW domain | 167 | 203 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0060090 | molecular adaptor activity | MF |
| GO:0035329 | hippo signaling | BP |
| GO:0005515 | protein binding | MF |
| GO:0042127 | regulation of cell population proliferation | BP |
| GO:0006915 | apoptotic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
