Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose dehydrogenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2983 g2983.t1 isoform g2983.t1 21726742 21735786
chr_3 g2983 g2983.t1 exon g2983.t1.exon1 21726742 21727764
chr_3 g2983 g2983.t1 cds g2983.t1.CDS1 21726742 21727764
chr_3 g2983 g2983.t1 exon g2983.t1.exon2 21727832 21728645
chr_3 g2983 g2983.t1 cds g2983.t1.CDS2 21727832 21728645
chr_3 g2983 g2983.t1 exon g2983.t1.exon3 21730374 21730424
chr_3 g2983 g2983.t1 cds g2983.t1.CDS3 21730374 21730424
chr_3 g2983 g2983.t1 exon g2983.t1.exon4 21730490 21730663
chr_3 g2983 g2983.t1 cds g2983.t1.CDS4 21730490 21730663
chr_3 g2983 g2983.t1 exon g2983.t1.exon5 21730726 21730816
chr_3 g2983 g2983.t1 cds g2983.t1.CDS5 21730726 21730816
chr_3 g2983 g2983.t1 exon g2983.t1.exon6 21730873 21732233
chr_3 g2983 g2983.t1 cds g2983.t1.CDS6 21730873 21732233
chr_3 g2983 g2983.t1 exon g2983.t1.exon7 21732879 21733010
chr_3 g2983 g2983.t1 cds g2983.t1.CDS7 21732879 21733010
chr_3 g2983 g2983.t1 exon g2983.t1.exon8 21733708 21733758
chr_3 g2983 g2983.t1 cds g2983.t1.CDS8 21733708 21733758
chr_3 g2983 g2983.t1 exon g2983.t1.exon9 21733920 21734057
chr_3 g2983 g2983.t1 cds g2983.t1.CDS9 21733920 21734057
chr_3 g2983 g2983.t1 exon g2983.t1.exon10 21734159 21735426
chr_3 g2983 g2983.t1 cds g2983.t1.CDS10 21734159 21735426
chr_3 g2983 g2983.t1 exon g2983.t1.exon11 21735485 21735659
chr_3 g2983 g2983.t1 cds g2983.t1.CDS11 21735485 21735659
chr_3 g2983 g2983.t1 exon g2983.t1.exon12 21735740 21735786
chr_3 g2983 g2983.t1 cds g2983.t1.CDS12 21735740 21735786
chr_3 g2983 g2983.t1 TSS g2983.t1 NA NA
chr_3 g2983 g2983.t1 TTS g2983.t1 NA NA

Sequences

>g2983.t1 Gene=g2983 Length=5325
ATGAAGTTAAAATATATGTTTCTTTTAATATCGATCTTTAGCTATGTGAAATCAAGTTCA
AGTCCATTGAATCAACTTTTTCAGACGGCCTCAAGGTTTTTAACGTTAGGACAAAATAGA
CTTGATCAGGAGAAAGAAAATCAAGAAATTTTAAATGATTCTTATGATTTCATTGTCGTT
GGTGCAGGGAGTGCTGGTTGTGCTCTTGCTGCAAGGCTTTCGGAAAATCCTAATTGGAAA
GTGCTTTTAATTGAGGCAGGTGGAAGTGAAAATTTTGCAATGGATATACCAATGATGGTT
CATTTTTTGCAAGGATATGATATAAATTGGAAATTTAAAACTGAACCGTCAAAAACTGCT
TGTTTAGCGATGAACAATAATCAATGTAATTGGCCAAGAGGTAAAGTGATGGGCGGTAGT
AGCGTCTTAAATTACATGGTTTATACTCGCGGTCATCCACAAGACTATGATAATTGGGCA
GCATTGGGTAACGACGGCTGGGACTTTCAAAATGTTTCACACTATTTTCGTAAATTGGAA
AACAATGTAGTGCCAGATAGCACACCAAATAATTATCATGGAAAAAATGGTCCAATCACA
GTTTCATATTTAAATTTCCAATCAGATTCAGCGAAAGCATTTGTTGCAGCTGGAATAGAG
AGTGGATATCCTTACACTGATTATAATGGTCCTAATCAAGTTGGTTTTTCATTTTTACAA
GCGACAATTGAAAATGGAATACGTAAAAGTACAAACGTTGGATATCTTTATCCAGTTAGA
AATCGCAAAAATTTACATGTGAGAAAGAATAGTCGCGTTACAAAGATTCTTATCGATGAG
AATAAAAATACATATGGCGTGCAATTCTATTCAAACCGGAAATTTTACACTGTAAAAGCA
AGTAAAGAGGTGATTTTATCGGCTGGAGCATTACAATCTCCACAGTTGTTGATGTTATCA
GGTATTGGACCAAAAAAACATTTGAGAGCTAATGGCATCAAGCCAATTGTTAATCTTGCT
GTGGGTTACAATCTAATGGATCACACAGCCCCTGGAGCTTTGACATTTATCGTGAATTCA
ACATCTATTGGTTTAAATACTTATAGACTGATGGACTTGAAAGTTATTGATAAATATGTA
AATGAGTTGAATGGACCAATTTCATCACCTGGCATTGAAAGTATTGCTTTCATAGAAACT
GATAAATCTTATTATGATCCAAATGGTTATCCTGATTTAGAATATTTGCAATTGGGAGGG
TCACTCAATTCTGATCCAGTTTTTAGAAGAAACTTTGGTATTCGTGACGAAATTTATAAT
GAAATGTTTGCTCCGCTTGAGAGCACTGAATCAAATACATTCATGGTTTTCCCAATGGTG
ATGCGACCAAAGAGCAAGGGACGCATTAAGTTACGCTCTGACAATCCCTTCGATTCGCCT
GCCATTCTTCCCAATTACTTTAGTGATCGCTATGACATTGACATTGCAATACGTGGCATT
CGTAGACTTATTGAATTAGGAAATACTCAAGCATTGCAAAAGTTAAATGCAAAATTTTTG
AAAACACCTGTACCAGGATGCAAGCATTATGAATTTGATTCTGATGATTATTGGGAATGT
TATACTAGACATTTTACTCTTACTATTTATCATCATTGTGGGACAGCTAAAATGGGCCCA
GAAAGTGATAAACATGCAGTCGTTGACTCTCATTTGAGAGTGTACGGTGTAAAAGGTCTT
CGTGTTGTTGACGCTTCAATAATGCCGGAAATTATTACAGGACATACGAATGCTCCGGTA
ATAATGATTGCAGAAAAGGCAGCTGATCTCATAAAAAAACCACGATACTTCGATCATTAC
GATTTTTTAATTGTGGGCTCGGGCGCAGGTGGCTGTGTTCTCGCAAATCGTTTGACTGAG
AATGAAAAGTGGAATGTCTTGTTGATTGAGGCAGGAAAGGTTGAAACACCGGTACAAGAT
ATTCCAGTATTGGCAGCTTATATGCAATCAACTGCTTACAATTGGGGTTATATAGCAGAA
GCTCAACCATACTCTTGTCTTGGTATGGATGAGCATAGATGTGGATTCCCTCGTGGTAAA
GCAGTTGGTGGTACAAGTGTAATAAATTACATGATTTACAATCGAGGACACAAAAATGAT
TTTGATCGTTGGTCAGCAGTTGGAAATAGAGGATGGTCGTGGAACGAAGTTCTTCCTTAT
TTTATTAAATCAGAACGTTCAACACTAGAGGATTTAAAAAATTCTCCTCATCATGGCAAA
CACGGATTGTTAAATGTGGAATATAACAGACATCGTACAGTATTAGCTGAGCTTTTTGTC
AAAGCAAATAAACTTTTGGGTGCATCAGAAGTTGATTACAACAGTGGTCGTCAGCTTGGT
GTATCTTTTTTGCAAGCAAATACATTGAATGGTAAACGGCATTCGGCCTATAAAGCCTTC
ATAGAACCGATTATTAATCGACATAACCTTCATTTAATGATTAACACTCACGTAACGAAA
ATCTTGATTGATCCACAAACAAAAATAGCTTACGGAGTTGAATTAATTAGAAATCGAAAG
CGTTATCGGATTAATGCAAGAAAGGAAGTTATTTTAGCTTCAGGGACTTTCCAATCACCA
CAACTTTTGATGCTTTCAGGAATAGGTCCAAAAGAGCAATTAAAAAGAATTCAAATTCCA
TTAATACACGATCTTCCGGTTGGAAAAATTATGTACGATCATTTAACTCATCTTGGAATG
GTTTTCATTGTAAATACAACTGGAGTGTCGTTAAACGCAGAGAGAGCACTTCAGCCAAGA
AGTGCCATAGAATTTTTAAATGGAAGAGGTATATTAACAGTTCCTGGTGGCGTTGAAGCT
TTAAGCTTTATTAAAACAAAAAATTCTGACTTTCGTGGAAAAGATGTTCCTGATGTAGAA
TTAATTTTTACTGCAGGAAGTTTTCATAGTGATGAGGGAACAGGAATAAGAAAAGGCATG
AGAGTTAATGATAATATATACAATAGAGTATATAAACAATTAGAAGCCACTACAATTGAT
TCTTTTTCTATCGTTCAAATGCTCTTTCATCCTAAATCAGTAGGTTATTTAGAACTGAAG
AGCTCAAATCCATTTCACTGGCCAAAATTCTATACAAATTTTCTTAAAGATCCTGATGAC
ATTGAGACAATTCTTGAAGGAATAAAGTTCACACTTAAACTTGTCAATACTCCTCCATTC
AAAAGTGTTGGTGCTCGTCTGCATTCAGTACCAATACCCAATTGTGCACACATTCATTTC
GCTTCAGACGATTATTGGCGATGTACAATTCGAACTTTGGCAACAACTTTACATCATCAA
GTTTCGACATGCAAAATGGGTCCAATTAGTGATCGAACTGCCGTGGTATCACCTGAACTA
AGAGTACATGGCATTCAAAACTTGCGCATTGCTGATACAAGCATTATTCCAGAAGCCCCC
ACATCTCATACCAATGCAATGTCTTTTATGATAGTAAATCCTTGCCATGTGCATTGTTCA
TCAGATGATAGTAACTATCATGATTTTGTGAATCGTACAAAAAGACAATCTATTGCAAGT
GCACCAGATTTTTTCTTATTTCGTTCACCGCTTAATAGTGTTGAAGAATATCGTTATTTC
GAGCAATATGATTTTATCATCGCTGGAAGTGGCCCAGGCGGTTGTGCTTTAGCAAATCGA
CTTACAGAGAATTCCAAATGGAATGTATTATTGATTGAAGCTGGTGATGTTGAGAGTCCG
TTGCAAAGCATTCCAGTTACAGCACCATATATGGTATTTTCAAAATACAACTGGGGACGT
GAAGCAAAACGATGTGCCACACCACGAGGCAAGGCTCTTGGCGGCAGTAGTGTTATTTAT
TTTTTGATGCATACTCGGGGTAATCCACGTGATTTTGATCGTTGGTCAGAAGCAGGAAAT
TATGGCTGGAGCTTTAATGAAGTTCTTCCTTATTTCATAAAATCAGAGAGAGCGAATATT
GGCAAATACTCAAACTCACCTTTCCATAATAGAAATGGCTTATGGGGAGTTTCGTTTAAC
ACAGAAAGAACGCCTTTAGTCAAAGCCTTTATAAAGGCAAACAAGCTTTTGGGACTGCCA
GAGATTGATTACAACAGCGATCGTCAACTAGGTGTCTCTTATGTGCAAGCAAATACATTA
AATGGACAAAGACACTCGGCTTATAAAGCCTTTATTGAGCCAATTCTTCATAGACAAAAT
TTACATATCATGGTGAATACGAGAGTGACAAAAATTTTAATTGACCCAGAAACGAAAAGC
GCATATGGTGTTGAGTATCATCGAAATAACAAAAATTATCGTGTTCGAACGAAGAAGGAA
GTGATTTTGTCGTCCGGAACATTTCATACACCACAACTTTTAACATTATCAGGTATTGGA
AAAAAACAACATTTGAATAAACTCAAAATTCCTGTGATCAATGAATTGCCTGGGGTAGGC
GAAAATATGCACGATCATTATGCTTTCGCTGAATTGATGTTTATTACAAACAAAACGAGA
GACGGTTTCATGACCTATCTCACTAATTTTTTTCAATACTTTAATGGTCGTGGTTTGTTA
ACTCTACCGAGCGGAACAGAAGCTTTCAGTTTTATTAAAGTGCCAACAACTAACAGTTAT
GGACCTAGTGTTCCTGACATTGAACTGATCTTCTCACCAGGTGGTGTTCATTTTGATCGT
GGATTTGGAATAACATATGGAGGAAGAATGCGAAAAGATCTTTACGATGCCGTGTATAAG
CCATTAGAAAATTCTGAAAATGATGTATTTCTCATCTCGCTAATGTTATTTCATCCAAAA
TCAATCGGTCGAATTGAAATTCCAAGTGCTAATCCATTTAGCGACCCACGAATATATGAA
AATATGTTTGAAGATTCGAGTGATATTGAAGCGCTTTTGTATGGTATCAAATACGTTTTA
AAATTAATAAAACAGGAGCCATTTAAAAGTTTGGGTGCTCGTCTTAATCCAAATAAACTC
CCGATTTGTGCACACTTGCATTTTGCATCTGATAATTATTTCCGTTGTGTTATTCGCGCT
ATGACATTTTCTATTCAACATCAAGTAGGAACTTCAAAAATGGGACCACGATCAGATCCT
TCTGCTGTTGTATCACCTGAGCTCAAAGTTCATGGCATGAAAAATTTACGGATTGTTGAT
ACTTCAATCGTTCCTGAAGCACCAACCGCTCACACTAATGCGATATCTGTTATGATAGGA
GAAAAAGCAGCAGACTTGATTAAACGAGATTGGTATAAACAATAA

>g2983.t1 Gene=g2983 Length=1774
MKLKYMFLLISIFSYVKSSSSPLNQLFQTASRFLTLGQNRLDQEKENQEILNDSYDFIVV
GAGSAGCALAARLSENPNWKVLLIEAGGSENFAMDIPMMVHFLQGYDINWKFKTEPSKTA
CLAMNNNQCNWPRGKVMGGSSVLNYMVYTRGHPQDYDNWAALGNDGWDFQNVSHYFRKLE
NNVVPDSTPNNYHGKNGPITVSYLNFQSDSAKAFVAAGIESGYPYTDYNGPNQVGFSFLQ
ATIENGIRKSTNVGYLYPVRNRKNLHVRKNSRVTKILIDENKNTYGVQFYSNRKFYTVKA
SKEVILSAGALQSPQLLMLSGIGPKKHLRANGIKPIVNLAVGYNLMDHTAPGALTFIVNS
TSIGLNTYRLMDLKVIDKYVNELNGPISSPGIESIAFIETDKSYYDPNGYPDLEYLQLGG
SLNSDPVFRRNFGIRDEIYNEMFAPLESTESNTFMVFPMVMRPKSKGRIKLRSDNPFDSP
AILPNYFSDRYDIDIAIRGIRRLIELGNTQALQKLNAKFLKTPVPGCKHYEFDSDDYWEC
YTRHFTLTIYHHCGTAKMGPESDKHAVVDSHLRVYGVKGLRVVDASIMPEIITGHTNAPV
IMIAEKAADLIKKPRYFDHYDFLIVGSGAGGCVLANRLTENEKWNVLLIEAGKVETPVQD
IPVLAAYMQSTAYNWGYIAEAQPYSCLGMDEHRCGFPRGKAVGGTSVINYMIYNRGHKND
FDRWSAVGNRGWSWNEVLPYFIKSERSTLEDLKNSPHHGKHGLLNVEYNRHRTVLAELFV
KANKLLGASEVDYNSGRQLGVSFLQANTLNGKRHSAYKAFIEPIINRHNLHLMINTHVTK
ILIDPQTKIAYGVELIRNRKRYRINARKEVILASGTFQSPQLLMLSGIGPKEQLKRIQIP
LIHDLPVGKIMYDHLTHLGMVFIVNTTGVSLNAERALQPRSAIEFLNGRGILTVPGGVEA
LSFIKTKNSDFRGKDVPDVELIFTAGSFHSDEGTGIRKGMRVNDNIYNRVYKQLEATTID
SFSIVQMLFHPKSVGYLELKSSNPFHWPKFYTNFLKDPDDIETILEGIKFTLKLVNTPPF
KSVGARLHSVPIPNCAHIHFASDDYWRCTIRTLATTLHHQVSTCKMGPISDRTAVVSPEL
RVHGIQNLRIADTSIIPEAPTSHTNAMSFMIVNPCHVHCSSDDSNYHDFVNRTKRQSIAS
APDFFLFRSPLNSVEEYRYFEQYDFIIAGSGPGGCALANRLTENSKWNVLLIEAGDVESP
LQSIPVTAPYMVFSKYNWGREAKRCATPRGKALGGSSVIYFLMHTRGNPRDFDRWSEAGN
YGWSFNEVLPYFIKSERANIGKYSNSPFHNRNGLWGVSFNTERTPLVKAFIKANKLLGLP
EIDYNSDRQLGVSYVQANTLNGQRHSAYKAFIEPILHRQNLHIMVNTRVTKILIDPETKS
AYGVEYHRNNKNYRVRTKKEVILSSGTFHTPQLLTLSGIGKKQHLNKLKIPVINELPGVG
ENMHDHYAFAELMFITNKTRDGFMTYLTNFFQYFNGRGLLTLPSGTEAFSFIKVPTTNSY
GPSVPDIELIFSPGGVHFDRGFGITYGGRMRKDLYDAVYKPLENSENDVFLISLMLFHPK
SIGRIEIPSANPFSDPRIYENMFEDSSDIEALLYGIKYVLKLIKQEPFKSLGARLNPNKL
PICAHLHFASDNYFRCVIRAMTFSIQHQVGTSKMGPRSDPSAVVSPELKVHGMKNLRIVD
TSIVPEAPTAHTNAISVMIGEKAADLIKRDWYKQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
23 g2983.t1 Gene3D G3DSA:3.50.50.60 - 55 612 5.3E-192
26 g2983.t1 Gene3D G3DSA:3.30.560.10 Glucose Oxidase 92 550 5.3E-192
22 g2983.t1 Gene3D G3DSA:3.50.50.60 - 620 1171 3.3E-164
25 g2983.t1 Gene3D G3DSA:3.30.560.10 Glucose Oxidase 658 1118 3.3E-164
21 g2983.t1 Gene3D G3DSA:3.50.50.60 - 1223 1768 1.9E-159
24 g2983.t1 Gene3D G3DSA:3.30.560.10 Glucose Oxidase 1261 1706 1.9E-159
9 g2983.t1 PANTHER PTHR11552:SF208 GLUCOSE DEHYDROGENASE [FAD, QUINONE]-LIKE PROTEIN 38 613 0.0
12 g2983.t1 PANTHER PTHR11552 GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE 38 613 0.0
8 g2983.t1 PANTHER PTHR11552:SF208 GLUCOSE DEHYDROGENASE [FAD, QUINONE]-LIKE PROTEIN 617 1172 0.0
11 g2983.t1 PANTHER PTHR11552 GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE 617 1172 0.0
7 g2983.t1 PANTHER PTHR11552:SF208 GLUCOSE DEHYDROGENASE [FAD, QUINONE]-LIKE PROTEIN 1206 1772 0.0
10 g2983.t1 PANTHER PTHR11552 GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE 1206 1772 0.0
3 g2983.t1 Pfam PF00732 GMC oxidoreductase 55 349 5.2E-80
6 g2983.t1 Pfam PF05199 GMC oxidoreductase 463 607 1.8E-40
2 g2983.t1 Pfam PF00732 GMC oxidoreductase 620 915 3.1E-71
5 g2983.t1 Pfam PF05199 GMC oxidoreductase 1031 1171 4.2E-32
1 g2983.t1 Pfam PF00732 GMC oxidoreductase 1223 1507 8.6E-68
4 g2983.t1 Pfam PF05199 GMC oxidoreductase 1619 1763 5.2E-32
28 g2983.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
29 g2983.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 6 -
30 g2983.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 7 14 -
31 g2983.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 18 -
27 g2983.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 1774 -
33 g2983.t1 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 309 323 -
35 g2983.t1 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 699 722 -
32 g2983.t1 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 875 889 -
34 g2983.t1 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 1466 1480 -
16 g2983.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 51 613 1.87E-86
13 g2983.t1 SUPERFAMILY SSF54373 FAD-linked reductases, C-terminal domain 388 555 8.54E-42
17 g2983.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 618 1171 4.81E-72
15 g2983.t1 SUPERFAMILY SSF54373 FAD-linked reductases, C-terminal domain 956 1123 3.63E-35
18 g2983.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 1221 1772 4.07E-72
14 g2983.t1 SUPERFAMILY SSF54373 FAD-linked reductases, C-terminal domain 1545 1711 1.37E-28
20 g2983.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 18 -
19 g2983.t1 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 18 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values