General information for g3045.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Zinc transporter ZIP13-like protein.
Parent gene
- The parent gene g3045 is located on chr_3: 22328852..22330342 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3045 | g3045.t10 | TTS | g3045.t10 | 22327224 | 22327224 |
| chr_3 | g3045 | g3045.t10 | isoform | g3045.t10 | 22327462 | 22329331 |
| chr_3 | g3045 | g3045.t10 | exon | g3045.t10.exon1 | 22327462 | 22328207 |
| chr_3 | g3045 | g3045.t10 | cds | g3045.t10.CDS1 | 22327462 | 22328207 |
| chr_3 | g3045 | g3045.t10 | exon | g3045.t10.exon2 | 22328276 | 22328398 |
| chr_3 | g3045 | g3045.t10 | cds | g3045.t10.CDS2 | 22328276 | 22328398 |
| chr_3 | g3045 | g3045.t10 | exon | g3045.t10.exon3 | 22328843 | 22329194 |
| chr_3 | g3045 | g3045.t10 | cds | g3045.t10.CDS3 | 22328843 | 22329029 |
| chr_3 | g3045 | g3045.t10 | exon | g3045.t10.exon4 | 22329264 | 22329331 |
| chr_3 | g3045 | g3045.t10 | TSS | g3045.t10 | 22329328 | 22329328 |
Sequences
>g3045.t10 Gene=g3045 Length=1289
ATTCTGTAGTGAGCAATTGAGTCATCCGGTTGTGCTAAGAAAAGAAGTGCCTTAGAAGAG
AAAAATCTCCAATTCTTTTATCGAGTGTATTTTAAGTGGAAGCAACTAAATCAATTGATT
GAATTGCAAATTCGAAGCAATGAACAGTTATTAATACGATTCTTTGAAACTACAAAAATT
ACTTTTAATTGAAATTTCTTCTGATAATAACCATCAACTTCTTATTTACTCAAATGAATT
CATCAATGGATGCCATTTCAACAATTTTGGATCTATATGTGCCCGAGTACATAAAAACTA
TAGAATATGTGCCATGGATATTTTCTTTATTTGGATCAGCACTAATAGGTTTAAGTGGTA
TATTACCACTATTAATTATACCAAACCATGAACCAGGCAAAGAAAGTGAAATGAAAAATC
CTGCAGATTCAAAATTCTTAAAAACGCTGTTGAGTTTTGCTGTTGGTGGTCTATTGGGTG
ATGTTTTTTTACATTTGCTACCAGAAGCATGGGAATCAGATATGAAGGATAGAAGTCTCA
GCGGTGATGAGCATCCATCGATAAGAAGCGGCATGTGGGTGTTATCGGGAGTTTTAATTT
TTACAATTGTGGAGAAAATCTTCAGTGGCTATGCAAATGCAGATGAAAATAATCCTCAAC
CGAAATGTGTTGAAATTGCAAATTGTTTGCTTCGTCGGAATGGTGGAAAATTGCCTGAAG
GAGCAGTCAGCTGTGCCCCAAACGGATCTTGTGATATAGAAGATATTCCTAATGGTATTC
CTTGCTTCTTGGCTGAAAAAGATAAAAAAGGAAAAGAACCGCCATCAAAAAAAGTCGCAG
GATATTTAAATTTACTTGCAAACAGCATTGACAACTTTACACATGGTTTAGCAGTTGCTG
GTTCTTTTTTGGTATCTTTAAGACATGGAATTTTAGCAACGTTTGCAATTTTACTGCATG
AAATTCCACATGAAGTTGGCGATTTTGCAATTTTACTACGGTCTGGTTTCACACGATGGG
ATGCAGCCAAAGCTCAATTATTGACAGCTGGTGCTGGTTTATTAGGCGCACTCGTAGCAA
TTGGAGGTTCAGGCGTGACTTCAGCTATGGAAGCAAGAACATCTTGGATCATGCCTTTTA
CAGCAGGCGGCTTTTTACATATTGCTCTTGTAACAGTTCTTCCTGATTTACTTGAAGAAG
AGGATAAAATTGAATCATTAAAGCAATTAGGAGCATTAGTGCTCGGCATTGTTGTGATGG
CTGTGCTCACCGTTACATTAGAACATTGA
>g3045.t10 Gene=g3045 Length=351
MNSSMDAISTILDLYVPEYIKTIEYVPWIFSLFGSALIGLSGILPLLIIPNHEPGKESEM
KNPADSKFLKTLLSFAVGGLLGDVFLHLLPEAWESDMKDRSLSGDEHPSIRSGMWVLSGV
LIFTIVEKIFSGYANADENNPQPKCVEIANCLLRRNGGKLPEGAVSCAPNGSCDIEDIPN
GIPCFLAEKDKKGKEPPSKKVAGYLNLLANSIDNFTHGLAVAGSFLVSLRHGILATFAIL
LHEIPHEVGDFAILLRSGFTRWDAAKAQLLTAGAGLLGALVAIGGSGVTSAMEARTSWIM
PFTAGGFLHIALVTVLPDLLEEEDKIESLKQLGALVLGIVVMAVLTVTLEH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3045.t10 | PANTHER | PTHR16950 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 | 25 | 347 | 2.4E-99 |
| 3 | g3045.t10 | PANTHER | PTHR16950:SF16 | ZINC TRANSPORTER ZIP13 | 25 | 347 | 2.4E-99 |
| 1 | g3045.t10 | Pfam | PF02535 | ZIP Zinc transporter | 27 | 345 | 3.3E-59 |
| 15 | g3045.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 24 | - |
| 18 | g3045.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 25 | 48 | - |
| 12 | g3045.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 49 | 67 | - |
| 22 | g3045.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 89 | - |
| 16 | g3045.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 90 | 108 | - |
| 21 | g3045.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 109 | 126 | - |
| 10 | g3045.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 127 | 268 | - |
| 20 | g3045.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 269 | 292 | - |
| 14 | g3045.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 293 | 297 | - |
| 17 | g3045.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 298 | 320 | - |
| 11 | g3045.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 321 | 331 | - |
| 19 | g3045.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 332 | 349 | - |
| 13 | g3045.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 350 | 351 | - |
| 8 | g3045.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 28 | 50 | - |
| 9 | g3045.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 71 | 93 | - |
| 7 | g3045.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 113 | 135 | - |
| 5 | g3045.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 269 | 288 | - |
| 4 | g3045.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 298 | 320 | - |
| 6 | g3045.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 332 | 349 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0046873 | metal ion transmembrane transporter activity | MF |
| GO:0030001 | metal ion transport | BP |
KEGG
Orthology
- This transcript has been annotated with K14719 (solute carrier family 39 (zinc transporter), member 13)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
