Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_3 | g3045 | g3045.t6 | TTS | g3045.t6 | 22327224 | 22327224 |
chr_3 | g3045 | g3045.t6 | isoform | g3045.t6 | 22327462 | 22329029 |
chr_3 | g3045 | g3045.t6 | exon | g3045.t6.exon1 | 22327462 | 22328398 |
chr_3 | g3045 | g3045.t6 | cds | g3045.t6.CDS1 | 22327462 | 22328178 |
chr_3 | g3045 | g3045.t6 | exon | g3045.t6.exon2 | 22328843 | 22329029 |
chr_3 | g3045 | g3045.t6 | TSS | g3045.t6 | 22329328 | 22329328 |
>g3045.t6 Gene=g3045 Length=1124
ATGAATTCATCAATGGATGCCATTTCAACAATTTTGGATCTATATGTGCCCGAGTACATA
AAAACTATAGAATATGTGCCATGGATATTTTCTTTATTTGGATCAGCACTAATAGGTTTA
AGTGGTATATTACCACTATTAATTATACCAAACCATGAACCAGGCAAAGAAAGTGAAATG
AAAAATCCTGCAGATTCAAAATTCTTAAAAACGCTGTTGAGTTTTGCTGTTGGTGGTCTA
TTGGGTGATGTTTTTTTACATTTGCTACCAGAAGCATGGGAATCAGATATGAAGGATAGA
AGTCTCAGCGGTTAGTAGCAGTTTCCTTATCTTTTTACTTCAAAATAAGCACGTTTTTAT
TGCTCATAATATTTGCAGGTGATGAGCATCCATCGATAAGAAGCGGCATGTGGGTGTTAT
CGGGAGTTTTAATTTTTACAATTGTGGAGAAAATCTTCAGTGGCTATGCAAATGCAGATG
AAAATAATCCTCAACCGAAATGTGTTGAAATTGCAAATTGTTTGCTTCGTCGGAATGGTG
GAAAATTGCCTGAAGGAGCAGTCAGCTGTGCCCCAAACGGATCTTGTGATATAGAAGATA
TTCCTAATGGTATTCCTTGCTTCTTGGCTGAAAAAGATAAAAAAGGAAAAGAACCGCCAT
CAAAAAAAGTCGCAGGATATTTAAATTTACTTGCAAACAGCATTGACAACTTTACACATG
GTTTAGCAGTTGCTGGTTCTTTTTTGGTATCTTTAAGACATGGAATTTTAGCAACGTTTG
CAATTTTACTGCATGAAATTCCACATGAAGTTGGCGATTTTGCAATTTTACTACGGTCTG
GTTTCACACGATGGGATGCAGCCAAAGCTCAATTATTGACAGCTGGTGCTGGTTTATTAG
GCGCACTCGTAGCAATTGGAGGTTCAGGCGTGACTTCAGCTATGGAAGCAAGAACATCTT
GGATCATGCCTTTTACAGCAGGCGGCTTTTTACATATTGCTCTTGTAACAGTTCTTCCTG
ATTTACTTGAAGAAGAGGATAAAATTGAATCATTAAAGCAATTAGGAGCATTAGTGCTCG
GCATTGTTGTGATGGCTGTGCTCACCGTTACATTAGAACATTGA
>g3045.t6 Gene=g3045 Length=238
MWVLSGVLIFTIVEKIFSGYANADENNPQPKCVEIANCLLRRNGGKLPEGAVSCAPNGSC
DIEDIPNGIPCFLAEKDKKGKEPPSKKVAGYLNLLANSIDNFTHGLAVAGSFLVSLRHGI
LATFAILLHEIPHEVGDFAILLRSGFTRWDAAKAQLLTAGAGLLGALVAIGGSGVTSAME
ARTSWIMPFTAGGFLHIALVTVLPDLLEEEDKIESLKQLGALVLGIVVMAVLTVTLEH
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
2 | g3045.t6 | PANTHER | PTHR16950 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 | 1 | 233 | 1.5E-73 |
1 | g3045.t6 | Pfam | PF02535 | ZIP Zinc transporter | 2 | 232 | 5.8E-41 |
9 | g3045.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 155 | - |
14 | g3045.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 156 | 179 | - |
11 | g3045.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 180 | 184 | - |
13 | g3045.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 185 | 207 | - |
8 | g3045.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 208 | 218 | - |
12 | g3045.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 219 | 236 | - |
10 | g3045.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 237 | 238 | - |
7 | g3045.t6 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 23 | - |
6 | g3045.t6 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 23 | - |
3 | g3045.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 156 | 178 | - |
5 | g3045.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 185 | 204 | - |
4 | g3045.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 219 | 236 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0016020 | membrane | CC |
GO:0055085 | transmembrane transport | BP |
GO:0046873 | metal ion transmembrane transporter activity | MF |
GO:0030001 | metal ion transport | BP |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.