Gene loci information

Isoforms of this gene

  • There are 7 isoforms that are expressed from this gene.
  • The longest transcript is g3083.t1
  • List of isoforms

g3083.t1, g3083.t4, g3083.t5, g3083.t6, g3083.t7, g3083.t8, g3083.t9

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00730
ko00790
ko01100
ko01240
ko02020

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g3083.t1) is OG0005828. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012055764.1
Apis mellifera AMELL 1 GB55499-PA
Culicoides sonorensis CSONO 1 CSON001491-1
Polypedilum nubifer PNUBI 0 none
Polypedilum vanderplanki PVAND 3 g16715.t1, g10468.t1, g3083.t1
Polypedilum pembai PPEMB 2 g8723.t1, g6361.t1
Belgica antarctica BANTA 1 IU25_07805-mRNA-1
Clunio marinus CMARI 1 CRK96434.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL000931-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 0 none
Culex quinquefasciatus CQUIN 0 none
Anopheles atroparvus AATRO 1 AATE005361-PA
Anopheles sinensis china ASINEC 1 ASIC017912-PA
Anopheles dirus ADIRU 1 ADIR000410-PA
Anopheles farauti AFARA 1 AFAF006454-PA
Anopheles epiroticus AEPIR 1 AEPI003206-PA
Anopheles christyi ACHRI 1 ACHR004692-PA
Anopheles merus AMERU 1 AMEM018261-PA
Anopheles melas AMELA 1 AMEC006558-PA
Anopheles arabiensis AARAB 1 AARA000042-PA
Anopheles coluzzii ACOLU 1 ACOM041786-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON010596-PA
Anopheles gambiae AGAMB 1 AGAP010596-PA
Anopheles quadriannulatus AQUAD 1 AQUA003748-PA
Anopheles minimus AMINI 1 AMIN008199-PA
Anopheles culicifacies ACULI 1 ACUA026734-PA
Anopheles funestus AFUNE 1 AFUN019935-PA
Anopheles stephensi indian ASTEPI 1 ASTEI05340-PA
Anopheles stephensi ASTEP 0 none
Anopheles albimanus AALBI 1 AALB010402-PA
Anopheles darlingi ADARL 1 ADAC008590-PA
Drosophila willistoni DWILL 1 FBpp0251751
Drosophila pseudoobscura DPSEU 1 FBpp0282982
Drosophila persimilis DPERS 1 FBpp0177643
Drosophila ananassae DANAN 1 FBpp0126127
Drosophila melanogaster DMELA 1 FBpp0085095
Drosophila sechellia DSECH 1 FBpp0194396
Drosophila simulans DSIMU 1 FBpp0219960
Drosophila erecta DEREC 1 FBpp0130335
Drosophila yakuba DYAKU 1 FBpp0360054
Drosophila virilis DVIRI 1 FBpp0393996
Drosophila mojavensis DMOJA 1 FBpp0171531
Drosophila grimshawi DGRIM 1 FBpp0147876
Lucilia cuprina LCUPR 1 KNC24997
Musca domestica MDOME 1 MDOA013476-PA
Stomoxys calcitrans SCALC 1 SCAU009587-PA
Glossina brevipalpis GBREV 1 GBRI037831-PA
Glossina palpalis GPALP 1 GPPI038886-PA
Glossina austeni GAUST 1 GAUT024462-PA
Glossina pallidipes GPALL 1 GPAI048071-PA
Glossina morsitans GMORS 1 GMOY004885-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g3083.t1) is OG0008399. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN4961_c0_g1_i7.p1
Parochlus steinenii PSTEI PSG02151
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN TRINITY_DN7213_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN352_c17_g1_i6.p1, TRINITY_DN20829_c0_g1_i1.p3
Cricotopus draysoni CDRAY TRINITY_DN10377_c0_g1_i1.p1
Clunio marinus CMARI CRK96434.1
Cardiocladius sp CARDI TRINITY_DN2983_c0_g1_i19.p1
Belgica antarctica BANTA IU25_07805-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN4610_c0_g2_i1.p1, TRINITY_DN4610_c0_g1_i2.p1
Chironomus riparius CRIPA none
Chironomus columbiensis CCOLU none
Chironomus tentans CTENT g4778.t1
Chironomus dilutus CDILU none
Polypedilum nubifer PNUBI none
Polypedilum vanderplanki PVAND g16715.t1, g10468.t1, g3083.t1
Polypedilum pembai PPEMB g8723.t1, g6361.t1
Culicoides sonorensis CSONO CSON001491-1
Aedes aegypti lvpagwg AAEGYL AAEL000931-PA
Anopheles gambiae AGAMB AGAP010596-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation