General information for g3147.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Nucleoprotein TPR.
Parent gene
- The parent gene g3147 is located on chr_3: 23205432..23206631 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3147 | g3147.t1 | TSS | g3147.t1 | 23198187 | 23198187 |
| chr_3 | g3147 | g3147.t1 | isoform | g3147.t1 | 23198238 | 23206298 |
| chr_3 | g3147 | g3147.t1 | exon | g3147.t1.exon1 | 23198238 | 23198394 |
| chr_3 | g3147 | g3147.t1 | cds | g3147.t1.CDS1 | 23198238 | 23198394 |
| chr_3 | g3147 | g3147.t1 | exon | g3147.t1.exon2 | 23198692 | 23204156 |
| chr_3 | g3147 | g3147.t1 | cds | g3147.t1.CDS2 | 23198692 | 23204156 |
| chr_3 | g3147 | g3147.t1 | exon | g3147.t1.exon3 | 23204221 | 23205361 |
| chr_3 | g3147 | g3147.t1 | cds | g3147.t1.CDS3 | 23204221 | 23205361 |
| chr_3 | g3147 | g3147.t1 | exon | g3147.t1.exon4 | 23205432 | 23205562 |
| chr_3 | g3147 | g3147.t1 | cds | g3147.t1.CDS4 | 23205432 | 23205562 |
| chr_3 | g3147 | g3147.t1 | exon | g3147.t1.exon5 | 23205641 | 23205836 |
| chr_3 | g3147 | g3147.t1 | cds | g3147.t1.CDS5 | 23205641 | 23205836 |
| chr_3 | g3147 | g3147.t1 | exon | g3147.t1.exon6 | 23206186 | 23206298 |
| chr_3 | g3147 | g3147.t1 | cds | g3147.t1.CDS6 | 23206186 | 23206298 |
| chr_3 | g3147 | g3147.t1 | TTS | g3147.t1 | NA | NA |
Sequences
>g3147.t1 Gene=g3147 Length=7203
ATGGAGACTGAAAAAGCGGTTGCGACATTTGGCAATCGTGTATTGTCAAAAGAAGATTTA
GAAAAATTACCAGACGATGTACGCTCAAAATATGAATTATTTTTTTCTGAATTTCTTGAA
ATGAAGGCACTCTACGAGACTCAAAAGACAAACTTAGATGGCTTTCGTACAGAATATGAA
CAAAAGATTTCAGAGCTAACAGAGAAATATCAAGATGAATTTGCTAAAGCGCAATCAGCA
CAAGTTTGTGTTAAAGAACTACGTGAACAACTTGATGAAGCGCGTGAGGAAGTGACGAAA
TTGAGTGAAAATCTTAAGCGTAACGAAGCAGAATTGTTGGAATATCGTAAAGATCGTCAT
GGTGTCATTGATGAAAGAGACAGTCTTATGAAAATGGTTGAAAGAAGAAATTTTGAAGTT
GAACGATTGGAAGATGACATAAAGTCATTAAAAAAGCAATTGCAAGCTGCAATTAATGCC
AAATGTGAAGCACTTTCTAAGCTTGATGAAATTCAACATAAAGAGTCAAATATTGAATTT
AAGGAACGTCGATTAGAGCAAGAAAGAGTTTTATTACAAAGTCAAATTGATATGCTCACA
GCTGATCTCAATCGCAACATTCAAGAGCTTCAAAAATGTCGAAAAGAATCAACAGCTCGA
ACGATGACAATTGAAACAAAGTTGCATGAGAAAACTGAAGAATTGAGCATTGCAACTTCA
CAAATTGCTCATTTAACTGAAACCAATACATCGCTAAATGCAAGAATTGAAGAACTCTCA
CAACAAATTCTTTCACATAGCGAAGAATTTACAAAAATGATGGAAAAGTACCAAAAAGAA
CTGCAAGCAAAAACAAGACTTGCTGAATTGTATAAGGATAAGAGTGAAGAAGCAATTAAT
GAACAGCGTGATATTGCAAATGTTGTTAGTGAACTAAAATCTACGTTAAAAGAAGCGACA
GAAGAATATGGAAATTTAGAGACAAAATATCGACAACTTGAGCTCAGTCAACAGCAAGAA
CTTGATAAAAAGAATGAGGAAATTCTTTCATTGCAAGATGAATTGAAAAATGCAAATGAT
CTTTTAAAAGCAGCACAACAAGAAAATATTGATATTGCTGTAGAAAAATTATGTCCAGCA
GCAGCAACTACAAGTAAATTAATTAAGTCAGGCAAATCTTTGACTGAAATTTACAGTATG
TATGTTAATACACAAGAAGAATTGACGCGTGTTAAAAAAGATCATGAGCAAATGAAATTA
CGTTTTTCTGAAGTGCTGCAAGAAATTCAAGAGAAAGCTCCAATCATTCAGCGCACGCAA
ATTGATCTTGAGAAGGCGACTGAGGCAAATAATGAATTGAATAATCAACTTGAGGCGCTT
ATACGCGAACGTGTCGACACAAGACAACAAATTGATGAATTAGTTCTGAAAATAAAGAGC
CTTGACACACAGACAAAGGAATTGCTACGTGATCGTCAGGATTTAAGTCGACAGGTGTGT
CATTTACTGCAAATAATTGAGCAGGCCCGTGGAGGACAAGTAGCGCAGCACGATGACTCA
ATTACTTCTGACATGAGCGGAAATGAAGTAATCACGAAGCGCCTCGTGACATTTGCTGAT
ATACAAGAGCTTCAACAAAATAATGTTCAGCTTCTCGCTATCGTCCGTGACCTGACAGCA
AAGGTCGAAGAGATGGATGAGATTAAGAGTCATATGGACCAAGCAACATACGAAGCAAAA
ATTGAAAATTACACGCGAAGATTACAAGAGATGCAAGAGAATATGGAATTACAGACACGA
ATGATGGAGAAGTGCATTTCGCAGCGTGAGCATTATAAAAAACTCTATAATGAGCTCAAT
AAGAAAGGACCGAGTAAGAATTCAAGCATTACTGATACATTCATGGATACTGGTGATGAT
GAGAATACACCAAGTGCAAGCAATATCAGTCTCAATTCAGCTGGTCTTAATTCAAGTATT
GTTCATGAAAAGGATAAAAGAATTGGTGATTTAGAGAGTAAAATCAAGCAGTATGAGAAT
GAAATGAAGACATTGAGAGAAGAATATGAACATTATCGTAAAGAAAAACATCAAAATGAT
GAAATGCTGAATAAACAATTTGATACATTAAGAACTGAGCTTAGAGAAATTTCAACCCTC
AATTGCAAGTTGAAAGCACAAGTTGAACATCATGATGGTCAATTGAAAGTTCAACAGAAA
AATGTCGCAACTTATAAGAAACAAATTCAAGCATTGGAAGATCGAAATAAGAATTATGAA
GCGACAATAATAAAACATGAAACTGCAATGACTTATCTTAGAAATGAAGCAATGGATTGC
ACTTCTAAATTAAGCAGAGCTGAAATGATGATAGAAAAGCTTTCACAAGAAAATCGAATG
CTTAAAGATAGTGAAACACATTTGAAAGCTGAACGTGAAGTTCTTTATCGTGAGAGACAA
AGTAACAATTTGGTTTTGAATAATTTAGAAATGATAAAGACTACCATGGAACGTTCAGAG
AGTGAAGGTAAGATGCGCATGGAATCACGATTAGATGAACTAACACGTGAATGTTCAGCG
TTGCGAAGACGACTACAAGAAGAGCAAGACCGTTTCCGAGAACTCTCATCGCACCTTGAG
CGACAAACTCAGTCTGCAAAGGAACGTATGGAAGAAGAAAAAGCTCTTGCTAATAAATTC
CGTGAAGAATTGTCGCAAGCACGTGAAGAAATTGACAAAAAGTCACAAAAAATTGATCTG
TTATCAAAGAAACTTCAAGCATCGTTGACACCCACCGAGAGTGAAAATCCAGTAGCACAG
GCTAACAAAATGCGTAAAGAAATTGAGTTGAAACTTAGCGAAGTCATGCTTGAAAAGGAA
GCACTTGAAAAGGAATTATCATTGGCAAAAGAACACGCGAAACAGTACTGTGATATGGCG
GAATCATATGAGAAGCAATTGCTGGAACTCAATGAAACATATTCAGAATACAAGACACGT
GTTGATGCTGATTTGGCTGAAACTAAAAAGAGTGAAGCAAGTCTTAAGCAGCGAGTCAAT
GATTTAGAGACTGAAATTTCTTTAGACATCAATAATCGTCAATTGTTGGCAGGTGACACA
AATACGCAATTACATAAAGCTCAACTTGATTTGAAAGAAGCATTAACAAAGATTAGTGAA
AATAATCGTGAACTTCGTGAATTGCGTGAAAAGTCAATTGCATTGCAAGCATCATTAGAT
TCAGCAGAATCAAAATATGCAAATGAAATGATTTTGCATTCAAATGATATTAAAACAATG
GCACGATTGAAGGAAGAAATGACGTCAATTCGTCAACAATTTGAGCAATTGAAGCAAGCG
CGTGAAACAGCAGAAGAAAAGTTTGAAAATGGCAAGAAATTGTGGGCAGAACGCGAAGAA
ATATTCATGAAAGAAAAGAGCGAACTAGAGCAGCGTCTTGAGGATATGGACAAACAGAAT
GTCGCACTTCACGATCAAATTCAAGCGCTCTCAACGAAATTATTCATTAATGTTTCGCAA
TCAATGGACGAGTCAATGAGTGTTGATAATAATACTGCTGCCGACACCTCAATGAATCGT
TCAATTGCAAATGATGAGGAAAAGTCAAGTGAGCAATTGCTGCAAATCATTAAATATTTA
CGTAAAGAAAAAGACATTGCCGTAGCTAAATTTGATATTCTCAAATCTGAAAATGCTCGA
TTGAAATCTGAATTGCAAATGATTCAAAAGAAGTTGGATGAAACTCAAGCAAATTATATT
AATCGTCAAGATGATTCAGCAGCAATGACGAGTGAGAAACATCAAGAATTATTGCGTAAA
GTTGAGACATTAAATGCCATCACTGATAGCAATCGAATTTTGCGTGAAGAACGTGATGCT
TTGTCAATTAAATTCAATGCACTTCAACAGCGTGTGACAAAAGTTGAAGATGAATTAATT
CCATTGCAAGAAAAGAATCGTGAACTTGAAGTTAAAAATGAAACACTCAGCACTGAAAAT
CTTTCACTTAGAACTGAAGCAACTCGCTGGAGACAAAGAGCCAATGCACTTATTGAAAGA
TCAAATAAAAATTCACCAGATGATTGGAAACGACTTCAAACAGAGCGTGAAAATCTCGCA
AAAATGTTACAACTTGAAAAGGACCAACATAAGAAGACAATCGATGAAAATGCACAAATA
AAACAAGAGAAAACTCGAGTTGATAACGAAATTGTGAATTTACAAAAGAATTTGGCGCAA
AATCAAAATGAAATCAAGCGATTGACAGAAGAACTTGCTCAGTTGAGACAAACGAGTGGT
AAAGTAAGCCAGGAATTGCTTGAAACAAGAGTTCGTGCTGATGCCAAGGATGATGACATG
AAGAAGCTCACTGATGAGATTAGCAACAAAGAATTGCAATTGAGTCAATTGAAAGAGAAA
GAAACTCAAATTAGAAAAATTGCAAAACGCTACAAGGATCAATACCTTGAGCTCAAAAAT
CAAGTTGATTCTGGAACGACTCCAATAATCAAAGAGGGTGAAGGTAATGATGCAAATATG
GGTGAACCAAGTACAAGTCAACAAGATCAACAACTTGTTGAAGATAATAAACAATTAGAG
TCGAAAATTCAACAATTGCAGCAAGAAATTGAAAATATTCGTGCTGAAAATAATAAATTG
CAACAGGTTAATAATGAATTGAGATTGAAGGATGAATCATGCAAAGCATTATTGCAACAA
GCTAAAACAAAGATTGCACAGCTTAATGAAAAGAGAGAACAATTAACTCGTGAATCGACG
ACATTAAAAACTCAATTTGATCAACGTAATGATGAACATGAGCAAGTTGTAAGAAATTTA
AAAGCTCAATATGAATCAAGAGTTCAGCGACTTGAAAAAGAAATAAATGACACGACAAAT
GAAAAGACGGAGTTGATGCAGCGACTTAATCAATATCGTCAACTTGGCGCTAATCAAACA
TCAAAGCCTGCAACAAGCACAATGGAAAAAATGTCAACTGATGCATCAACAAGGACTGCA
AATGTGAAACCAATGGCTGGTCCAAGTCAGCAATCAGCGACAGTTCAGCCATGGCGTGGC
GGTAGTAGTACTTCATCTGGTGACACACCACTCGCTTCAATTCGTCCATTGTCAGTTCAA
AATTCACGAACAGCTGCAGTTATGCCAACTACAAATGTCTCAAACATTCAAGGATCTTCA
CAAAGTACGAGCACATCAGCTGGCACAAGTGTCACTGCTTTAGTGCCACCACAACAAGTT
CATACAACTGGTTCAACTTCACAGTCTGGTGAGGCAATTTCAAGTTCACCAACAAGTTCA
CACACTGATTATATGCCAGCCACAAGTTCTGCAACTGTAGTCGTTGCTGCAGTTGTTCCA
ATGGGCAACAACACAAGTGCAGCTGAAAGCTCATCACAAAGTCAAGAAATTGACCAAAAT
CTCGGTGGTGAAAGTTCAATTCAAATTGTAACAGGTGGTCAACAAATTCAGCAAGCTGTT
GTCGCACTCGTATCGCCACGTATTGAGAATCAACAGGCACAAAATTTACAAAATTTTGAC
AATCAAACGTCAAGTACAAGCGGTACTTCTTCATCTTCTTCGGCACCAACAATAGCAATA
AGTACTCATCATCAAGCATCAAGCAGTAATACAGTAACAACAACTCAAGCTGGTTCACAT
AAGAGACCACGTGATGAGGAAGGCGATAGTTCAACGTCAAATGATGAACAACCAAATAAA
CCTGTTCCACAAAAGAGAACGAGAGTTCAAGAAGGAACTTTCCAAGGTGTTTCAGAATCA
GGTTTAGAAGTTGAATATCAAGTGCCGACATCTTCACAACGTGATCAAGAAGATGATCCA
TGTATTGTACTTTCATCAGAGGATGAAGATGAAGACGATGATGAAGCAATGCCAGATGAA
GGAAATGCAGAAGGATTTGAAAATGATGGAATTGAAACTGGTTATAATTATGAAATGGAG
CATCAAGAAATGGAAGAAGGTCCAGATATTGATGATATTCAATCAAGTAATGCAAACAAT
GAAGTTGAAATTGAAGATTTATCAGAAGTTCCAAGCTCAGCAGCATCACAGCAAGAATCA
TCAGCAAGTCGACAGGGTGAAAATCAACAACAAATTCAAAGTATTTCAAGTGGTACGGGA
AACGGGAATGAAGCAGGACCATCAACATCAGGGACAACTAGTTCATCATTGAGTCCTGCT
ACAATTTCTCAATGGCGTCAATCACCAAATGCATCAACTTCAAGACAGCAACAGCATTTA
ATGCTTATGGGTCAAGCTTTTCAAGATGATGCTGGTGATGACAGAATTGTCCCAAGCACA
CCAACACTTTATAGATCACGAAATGATGGCTTCTCAGAAGTCGTTTCATCGCCACATACT
GCTCAAGTTCCTCATGCTGCTGCCCGTTTCACTTTCGGTGAATCTTCATCATCATCGACA
AGTGCAACACAAAGTCGACCATTAGCAGAAGGAATGGATGACACAAGAATTGATTTATCA
GAAGAACACAGTCAACCAACAAATCGAAGTGTGCCCAACATTCCTCAGCAAACTTCGCCA
GGCGACAACCTTATTAATGACTCAACCTCCGCTAGCACTAGCTCTACATCTTCAAGCATG
TCGACAGTAATACAACAAGACATTTTAGAGCAACAACCTGTGCCAGGTTCAAGTAATCAA
GAAGAAAGTCAAGTACCAGAAATAAGCATTACGACTGACGAAGAATATGAAGGTGCATCG
ACATCAGAGGCACAAGGCGAGCCAGAAAAGTCATCAGAGCAGCAAGAAACGGATGAAGGT
GGCGATGGAGTTAGTTCAGAGGGTGAAAAGTCATCGACAGCTGGTGTTGCTGAGGATGAA
ACAAGTGAAGCAGATGTGCTTGAGCAACCGCAAGTTATAAGAACAACACGTTCAGGAATG
AGAGGCAGCGTAAATCCTAATCCAAGTCCATCACGCGGCAGAATTGGTCGTGGTGCGCAA
CGTGGACGTTCGCCTATCGTTTGGGGATCTGATAATATGATGATGTCACAACAACAACAG
CAAATGGGTGGATCTCCCATTCGTACTCAATCATTCCCCAATACGCGTGGTGGAGGACGA
GCTCGTCGCGGCGGAAGAGGTAGAGCTTCAAGCAGTTCTCCATACAACAACATGCGATAT
TAA
>g3147.t1 Gene=g3147 Length=2400
METEKAVATFGNRVLSKEDLEKLPDDVRSKYELFFSEFLEMKALYETQKTNLDGFRTEYE
QKISELTEKYQDEFAKAQSAQVCVKELREQLDEAREEVTKLSENLKRNEAELLEYRKDRH
GVIDERDSLMKMVERRNFEVERLEDDIKSLKKQLQAAINAKCEALSKLDEIQHKESNIEF
KERRLEQERVLLQSQIDMLTADLNRNIQELQKCRKESTARTMTIETKLHEKTEELSIATS
QIAHLTETNTSLNARIEELSQQILSHSEEFTKMMEKYQKELQAKTRLAELYKDKSEEAIN
EQRDIANVVSELKSTLKEATEEYGNLETKYRQLELSQQQELDKKNEEILSLQDELKNAND
LLKAAQQENIDIAVEKLCPAAATTSKLIKSGKSLTEIYSMYVNTQEELTRVKKDHEQMKL
RFSEVLQEIQEKAPIIQRTQIDLEKATEANNELNNQLEALIRERVDTRQQIDELVLKIKS
LDTQTKELLRDRQDLSRQVCHLLQIIEQARGGQVAQHDDSITSDMSGNEVITKRLVTFAD
IQELQQNNVQLLAIVRDLTAKVEEMDEIKSHMDQATYEAKIENYTRRLQEMQENMELQTR
MMEKCISQREHYKKLYNELNKKGPSKNSSITDTFMDTGDDENTPSASNISLNSAGLNSSI
VHEKDKRIGDLESKIKQYENEMKTLREEYEHYRKEKHQNDEMLNKQFDTLRTELREISTL
NCKLKAQVEHHDGQLKVQQKNVATYKKQIQALEDRNKNYEATIIKHETAMTYLRNEAMDC
TSKLSRAEMMIEKLSQENRMLKDSETHLKAEREVLYRERQSNNLVLNNLEMIKTTMERSE
SEGKMRMESRLDELTRECSALRRRLQEEQDRFRELSSHLERQTQSAKERMEEEKALANKF
REELSQAREEIDKKSQKIDLLSKKLQASLTPTESENPVAQANKMRKEIELKLSEVMLEKE
ALEKELSLAKEHAKQYCDMAESYEKQLLELNETYSEYKTRVDADLAETKKSEASLKQRVN
DLETEISLDINNRQLLAGDTNTQLHKAQLDLKEALTKISENNRELRELREKSIALQASLD
SAESKYANEMILHSNDIKTMARLKEEMTSIRQQFEQLKQARETAEEKFENGKKLWAEREE
IFMKEKSELEQRLEDMDKQNVALHDQIQALSTKLFINVSQSMDESMSVDNNTAADTSMNR
SIANDEEKSSEQLLQIIKYLRKEKDIAVAKFDILKSENARLKSELQMIQKKLDETQANYI
NRQDDSAAMTSEKHQELLRKVETLNAITDSNRILREERDALSIKFNALQQRVTKVEDELI
PLQEKNRELEVKNETLSTENLSLRTEATRWRQRANALIERSNKNSPDDWKRLQTERENLA
KMLQLEKDQHKKTIDENAQIKQEKTRVDNEIVNLQKNLAQNQNEIKRLTEELAQLRQTSG
KVSQELLETRVRADAKDDDMKKLTDEISNKELQLSQLKEKETQIRKIAKRYKDQYLELKN
QVDSGTTPIIKEGEGNDANMGEPSTSQQDQQLVEDNKQLESKIQQLQQEIENIRAENNKL
QQVNNELRLKDESCKALLQQAKTKIAQLNEKREQLTRESTTLKTQFDQRNDEHEQVVRNL
KAQYESRVQRLEKEINDTTNEKTELMQRLNQYRQLGANQTSKPATSTMEKMSTDASTRTA
NVKPMAGPSQQSATVQPWRGGSSTSSGDTPLASIRPLSVQNSRTAAVMPTTNVSNIQGSS
QSTSTSAGTSVTALVPPQQVHTTGSTSQSGEAISSSPTSSHTDYMPATSSATVVVAAVVP
MGNNTSAAESSSQSQEIDQNLGGESSIQIVTGGQQIQQAVVALVSPRIENQQAQNLQNFD
NQTSSTSGTSSSSSAPTIAISTHHQASSSNTVTTTQAGSHKRPRDEEGDSSTSNDEQPNK
PVPQKRTRVQEGTFQGVSESGLEVEYQVPTSSQRDQEDDPCIVLSSEDEDEDDDEAMPDE
GNAEGFENDGIETGYNYEMEHQEMEEGPDIDDIQSSNANNEVEIEDLSEVPSSAASQQES
SASRQGENQQQIQSISSGTGNGNEAGPSTSGTTSSSLSPATISQWRQSPNASTSRQQQHL
MLMGQAFQDDAGDDRIVPSTPTLYRSRNDGFSEVVSSPHTAQVPHAAARFTFGESSSSST
SATQSRPLAEGMDDTRIDLSEEHSQPTNRSVPNIPQQTSPGDNLINDSTSASTSSTSSSM
STVIQQDILEQQPVPGSSNQEESQVPEISITTDEEYEGASTSEAQGEPEKSSEQQETDEG
GDGVSSEGEKSSTAGVAEDETSEADVLEQPQVIRTTRSGMRGSVNPNPSPSRGRIGRGAQ
RGRSPIVWGSDNMMMSQQQQQMGGSPIRTQSFPNTRGGGRARRGGRGRASSSSPYNNMRY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 45 | g3147.t1 | Coils | Coil | Coil | 56 | 118 | - |
| 29 | g3147.t1 | Coils | Coil | Coil | 133 | 160 | - |
| 27 | g3147.t1 | Coils | Coil | Coil | 171 | 216 | - |
| 41 | g3147.t1 | Coils | Coil | Coil | 242 | 294 | - |
| 30 | g3147.t1 | Coils | Coil | Coil | 309 | 375 | - |
| 37 | g3147.t1 | Coils | Coil | Coil | 401 | 421 | - |
| 31 | g3147.t1 | Coils | Coil | Coil | 436 | 498 | - |
| 38 | g3147.t1 | Coils | Coil | Coil | 541 | 561 | - |
| 40 | g3147.t1 | Coils | Coil | Coil | 574 | 622 | - |
| 44 | g3147.t1 | Coils | Coil | Coil | 661 | 702 | - |
| 35 | g3147.t1 | Coils | Coil | Coil | 735 | 769 | - |
| 25 | g3147.t1 | Coils | Coil | Coil | 777 | 811 | - |
| 46 | g3147.t1 | Coils | Coil | Coil | 844 | 924 | - |
| 43 | g3147.t1 | Coils | Coil | Coil | 938 | 1000 | - |
| 26 | g3147.t1 | Coils | Coil | Coil | 1005 | 1025 | - |
| 24 | g3147.t1 | Coils | Coil | Coil | 1044 | 1085 | - |
| 34 | g3147.t1 | Coils | Coil | Coil | 1100 | 1134 | - |
| 28 | g3147.t1 | Coils | Coil | Coil | 1139 | 1173 | - |
| 23 | g3147.t1 | Coils | Coil | Coil | 1231 | 1258 | - |
| 36 | g3147.t1 | Coils | Coil | Coil | 1291 | 1318 | - |
| 39 | g3147.t1 | Coils | Coil | Coil | 1326 | 1346 | - |
| 42 | g3147.t1 | Coils | Coil | Coil | 1383 | 1445 | - |
| 32 | g3147.t1 | Coils | Coil | Coil | 1453 | 1494 | - |
| 33 | g3147.t1 | Coils | Coil | Coil | 1529 | 1655 | - |
| 22 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 894 | - |
| 5 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1513 | 1534 | - |
| 14 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1519 | 1534 | - |
| 16 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1656 | 1722 | - |
| 19 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1731 | 1750 | - |
| 21 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1759 | 1785 | - |
| 9 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1855 | 1898 | - |
| 12 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1855 | 2400 | - |
| 11 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1899 | 1913 | - |
| 4 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1914 | 1937 | - |
| 8 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1944 | 1959 | - |
| 10 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1962 | 1986 | - |
| 15 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2030 | 2103 | - |
| 7 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2121 | 2139 | - |
| 17 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2151 | 2168 | - |
| 6 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2184 | 2268 | - |
| 20 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2278 | 2298 | - |
| 18 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2308 | 2330 | - |
| 13 | g3147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2350 | 2376 | - |
| 2 | g3147.t1 | PANTHER | PTHR18898 | NUCLEOPROTEIN TPR-RELATED | 30 | 2091 | 4.7E-279 |
| 3 | g3147.t1 | PANTHER | PTHR18898:SF2 | NUCLEOPROTEIN TPR | 30 | 2091 | 4.7E-279 |
| 1 | g3147.t1 | Pfam | PF07926 | TPR/MLP1/MLP2-like protein | 1043 | 1170 | 2.8E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006606 | protein import into nucleus | BP |
KEGG
Orthology
- This transcript has been annotated with K09291 (nucleoprotein TPR)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
