General information for g3147.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Nucleoprotein TPR.
Parent gene
- The parent gene g3147 is located on chr_3: 23205432..23206631 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3147 | g3147.t3 | TSS | g3147.t3 | 23198187 | 23198187 |
| chr_3 | g3147 | g3147.t3 | isoform | g3147.t3 | 23198238 | 23199065 |
| chr_3 | g3147 | g3147.t3 | exon | g3147.t3.exon1 | 23198238 | 23198394 |
| chr_3 | g3147 | g3147.t3 | cds | g3147.t3.CDS1 | 23198238 | 23198394 |
| chr_3 | g3147 | g3147.t3 | exon | g3147.t3.exon2 | 23198692 | 23199065 |
| chr_3 | g3147 | g3147.t3 | cds | g3147.t3.CDS2 | 23198692 | 23199065 |
| chr_3 | g3147 | g3147.t3 | TTS | g3147.t3 | 23199560 | 23199560 |
Sequences
>g3147.t3 Gene=g3147 Length=531
ATGGAGACTGAAAAAGCGGTTGCGACATTTGGCAATCGTGTATTGTCAAAAGAAGATTTA
GAAAAATTACCAGACGATGTACGCTCAAAATATGAATTATTTTTTTCTGAATTTCTTGAA
ATGAAGGCACTCTACGAGACTCAAAAGACAAACTTAGATGGCTTTCGTACAGAATATGAA
CAAAAGATTTCAGAGCTAACAGAGAAATATCAAGATGAATTTGCTAAAGCGCAATCAGCA
CAAGTTTGTGTTAAAGAACTACGTGAACAACTTGATGAAGCGCGTGAGGAAGTGACGAAA
TTGAGTGAAAATCTTAAGCGTAACGAAGCAGAATTGTTGGAATATCGTAAAGATCGTCAT
GGTGTCATTGATGAAAGAGACAGTCTTATGAAAATGGTTGAAAGAAGAAATTTTGAAGTT
GAACGATTGGAAGATGACATAAAGTCATTAAAAAAGCAATTGCAAGCTGCAATTAATGCC
AAATGTGAAGCACTTTCTAAGCTTGATGAAATTCAACATAAAGAGTCAAAT
>g3147.t3 Gene=g3147 Length=177
METEKAVATFGNRVLSKEDLEKLPDDVRSKYELFFSEFLEMKALYETQKTNLDGFRTEYE
QKISELTEKYQDEFAKAQSAQVCVKELREQLDEAREEVTKLSENLKRNEAELLEYRKDRH
GVIDERDSLMKMVERRNFEVERLEDDIKSLKKQLQAAINAKCEALSKLDEIQHKESN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g3147.t3 | Coils | Coil | Coil | 56 | 118 | - |
| 5 | g3147.t3 | Coils | Coil | Coil | 133 | 160 | - |
| 1 | g3147.t3 | PANTHER | PTHR18898 | NUCLEOPROTEIN TPR-RELATED | 21 | 176 | 2.2E-13 |
| 2 | g3147.t3 | PANTHER | PTHR18898:SF2 | NUCLEOPROTEIN TPR | 21 | 176 | 2.2E-13 |
| 3 | g3147.t3 | SUPERFAMILY | SSF58100 | Bacterial hemolysins | 26 | 157 | 8.37E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed