General information for g3321.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Inositol-trisphosphate 3-kinase B.
Parent gene
- The parent gene g3321 is located on chr_3: 24637660..24639774 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3321 | g3321.t4 | TTS | g3321.t4 | 24633755 | 24633755 |
| chr_3 | g3321 | g3321.t4 | isoform | g3321.t4 | 24633989 | 24635429 |
| chr_3 | g3321 | g3321.t4 | exon | g3321.t4.exon1 | 24633989 | 24634312 |
| chr_3 | g3321 | g3321.t4 | cds | g3321.t4.CDS1 | 24633989 | 24634312 |
| chr_3 | g3321 | g3321.t4 | exon | g3321.t4.exon2 | 24634399 | 24634557 |
| chr_3 | g3321 | g3321.t4 | cds | g3321.t4.CDS2 | 24634399 | 24634557 |
| chr_3 | g3321 | g3321.t4 | exon | g3321.t4.exon3 | 24634648 | 24634737 |
| chr_3 | g3321 | g3321.t4 | cds | g3321.t4.CDS3 | 24634648 | 24634737 |
| chr_3 | g3321 | g3321.t4 | exon | g3321.t4.exon4 | 24634798 | 24634931 |
| chr_3 | g3321 | g3321.t4 | cds | g3321.t4.CDS4 | 24634798 | 24634931 |
| chr_3 | g3321 | g3321.t4 | exon | g3321.t4.exon5 | 24635008 | 24635241 |
| chr_3 | g3321 | g3321.t4 | cds | g3321.t4.CDS5 | 24635008 | 24635083 |
| chr_3 | g3321 | g3321.t4 | exon | g3321.t4.exon6 | 24635307 | 24635340 |
| chr_3 | g3321 | g3321.t4 | exon | g3321.t4.exon7 | 24635408 | 24635429 |
| chr_3 | g3321 | g3321.t4 | TSS | g3321.t4 | 24635430 | 24635430 |
Sequences
>g3321.t4 Gene=g3321 Length=997
TTTGTACTTAAGACTCAGAGAGTCAGTGGTTGGATGGAGGAAACTTAGAAATATAGTTCA
ATGGACACCATTTTTTCAAACGTATTCAAAAAATAAACAAAAATATCCATGGGTTCAACT
TGCTGGTCATCAGGGAAATTTTAAAGCAGGTCTTGATGCCGGAACTGTGCTAAAAAAATT
AACGCCAAAAGAAGAGATTTGTTTTAAAGAGCTCATGAAAGACGTACTAAGACCATATGT
ACCAGAATTCAGAGGCGTCTGTAATGTTGAAGGCAGTGACGATAATGAATCTCAATATTT
ACAGCTTCAAGATCTGTTGAGTGATTTCAATAAACCATTTTGTGTTATGGACATTAAAAT
CGGAGTGAGAACGTATTTAGAGGAAGAGTTGTTTAAGGCAAAAGAGAAACAAAAGTTAAG
AAAAGATATGTATGAAAAAATGATTCAGGTTGATCCAAATGCACCAAGTGCGGAAGAACA
TGAAGCCAAAGGTGTAACAAAACCACGTTATATGGTTTGGCGTGAAACGATTTCAAGTAC
GGCAAATTTAGGATTCCGCATCGAAGGTATTAAAAAAGACGATTTCAAGACGAAAGACTT
TAAAACGATAAAATCACGTGAGGACATCACTGAAATGTTTAAAGAGTTCTTCAAAGGTTA
CCCACTCGCATTGCGGAAATATATTCAGCGCCTCAAAGCAATTCGAGCCACACTTGAACA
TTCAGATTTCTTCAAGAGTCATGAAATCATTGGAAGTAGTCTTTTATTTGTGCATGATCG
CAATAATGCAAGCTGTTGGTTGATTGATTTTGCCAAAACGGGAGTTGTGCCTGAAAATAT
TAAAATTACGCACAAAGATCAATGGGAAGTCGGAAATCACGAGGATGGCTATCTAATTGG
ACTTAATAATATTATCGAAATGTTTGACGATATTGCAAGACAAACGGAAAATTTTCATAA
ATCTGATGACGATGATCAAACAGATTCGAGTGATTGA
>g3321.t4 Gene=g3321 Length=260
MKDVLRPYVPEFRGVCNVEGSDDNESQYLQLQDLLSDFNKPFCVMDIKIGVRTYLEEELF
KAKEKQKLRKDMYEKMIQVDPNAPSAEEHEAKGVTKPRYMVWRETISSTANLGFRIEGIK
KDDFKTKDFKTIKSREDITEMFKEFFKGYPLALRKYIQRLKAIRATLEHSDFFKSHEIIG
SSLLFVHDRNNASCWLIDFAKTGVVPENIKITHKDQWEVGNHEDGYLIGLNNIIEMFDDI
ARQTENFHKSDDDDQTDSSD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3321.t4 | Gene3D | G3DSA:1.10.510.50 | - | 1 | 243 | 0 |
| 2 | g3321.t4 | PANTHER | PTHR12400:SF85 | KINASE | 1 | 250 | 0 |
| 3 | g3321.t4 | PANTHER | PTHR12400 | INOSITOL POLYPHOSPHATE KINASE | 1 | 250 | 0 |
| 1 | g3321.t4 | Pfam | PF03770 | Inositol polyphosphate kinase | 28 | 237 | 0 |
| 4 | g3321.t4 | SUPERFAMILY | SSF56104 | SAICAR synthase-like | 2 | 240 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016301 | kinase activity | MF |
| GO:0032958 | inositol phosphate biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
