General information for g3382.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3382 is located on chr_3: 24996029..24996967 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3382 | g3382.t6 | TSS | g3382.t6 | 24995077 | 24995077 |
| chr_3 | g3382 | g3382.t6 | isoform | g3382.t6 | 24995119 | 24996967 |
| chr_3 | g3382 | g3382.t6 | exon | g3382.t6.exon1 | 24995119 | 24995753 |
| chr_3 | g3382 | g3382.t6 | exon | g3382.t6.exon2 | 24995814 | 24995976 |
| chr_3 | g3382 | g3382.t6 | exon | g3382.t6.exon3 | 24996048 | 24996395 |
| chr_3 | g3382 | g3382.t6 | cds | g3382.t6.CDS1 | 24996309 | 24996395 |
| chr_3 | g3382 | g3382.t6 | exon | g3382.t6.exon4 | 24996501 | 24996682 |
| chr_3 | g3382 | g3382.t6 | cds | g3382.t6.CDS2 | 24996501 | 24996682 |
| chr_3 | g3382 | g3382.t6 | exon | g3382.t6.exon5 | 24996757 | 24996967 |
| chr_3 | g3382 | g3382.t6 | cds | g3382.t6.CDS3 | 24996757 | 24996967 |
| chr_3 | g3382 | g3382.t6 | TTS | g3382.t6 | 24997047 | 24997047 |
Sequences
>g3382.t6 Gene=g3382 Length=1539
ATGGAATATTTATTATCAAAAAATGTAGAATATGTCTGCGAATGTGGACTTTTAAAGCCG
CTAACTAATCTTTACTTCTGTAGACATTGCTTAAACTTAAGATGTTTCTTTTGCTGCCAT
CATGAGGTGAGATAATTAAAATTCAAAAATGTGACTCATCACTAAAATTTTCTTCAATTT
TTGCATAGGTGGACTCGCATTTCTGTCGAAATTGTCTTGAAAATATTCCTTCAGGAGAGG
CAAAATTAAGGAAGAATAAATGTAATACTTGCTTTGATTGTCCTTCATGCACTTTGTCGG
CTCTCTCTGCACGAGCTACAACAATTCAAGTTCCAATGACAAAAGAAGTGAAAGAAGGTG
GTGAGGGATCTGAAATAGAAGCGAGCAGCGGTAAAATGGTTTCAAAAAAGATGTACTATT
TAGCATGTTTGGCTTGTCGTTTTTCATCGCGAGATGTAGGGATTAGTGATCAGCCATCTC
AAAATTTTTTTTGGCCTGAGCAAGAATATATGCATGCAATAAGATTCAATACAATATTGA
ATCATTATTACTCAGTTGTGCTTCATGATAAGCAGCTTAAACAGGAAGAAAGACGTCGTC
GATCGACAAAACAGTCGAAATTCCCAAACATGACTGATCGCACTGGATTAAATGTTTCAG
CTATAAGACGTCAAATGGGATTTGATAAAAGTGCAGCTAAACCTAAAAGTAAACCGACTG
CAATAGCACCATCAATTGCAGAGGATGTTGATGATTTACCAGAAGAGATCTTTACTCAGC
CTATTAATTTGAAAAATACAGCGTTTTACGCAACCAGCTAATCAACCAGAAAGTGTTAAG
CATCTGTATCCACAACATAAGAATCTCTCTATTAAACGATCAATTCGATGTCGTCATTGC
GAGCATAATGTAATCAAACCAGAATATAATCCAACATCAATTAAATATAGAATTCAACAA
TTTGCAAGCAGTCATGTGCCTGAAGTTCGTATAATAAAATGTGACCAATTGGTGCCAAAT
AAGAGTGCATTAATTACTTTAAAAATTACCAATCCAACTATGAATGACATGATAATCACA
ATTATGGATCTTCCAACTGAAGAAGAGGAAAAAATGATGATTGAAGAAATGAGAAAGAAC
TTTGAGAAAAACTTGAGTGTTTCGAATAAATCATCTTTAATGCGTCCATCATTAATTGAA
GATTCAAGAATTGTGTCATGCAAGATCACTGCAAAACTTGAACTACCCGACAGTTCATTT
GTCATCAATCAACGTGATGATTCTGCGGAATTTGATGACGACGTTCAATCAGATAAGAAA
GATCCAAAATTCATTTTATGGCGAAAAGCGAATAAGATTGCTATCCAGCTGAGTATTACA
CCAAATGGTGAATTGAAGGTCAATGACGATGTCAAGATTGGTTTCTCAATGAATTTCACA
TATAGCTCAGTTCCATCTTCAACGCCTGAAAAGAAAGAAACTCAGCGTTATGCATTATGT
GCTCGCATTTATATTAATGCTGGAAAAATTGTTCAGTAA
>g3382.t6 Gene=g3382 Length=159
MNDMIITIMDLPTEEEEKMMIEEMRKNFEKNLSVSNKSSLMRPSLIEDSRIVSCKITAKL
ELPDSSFVINQRDDSAEFDDDVQSDKKDPKFILWRKANKIAIQLSITPNGELKVNDDVKI
GFSMNFTYSSVPSSTPEKKETQRYALCARIYINAGKIVQ
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
