Gene loci information

Transcript annotation

  • This transcript has been annotated as Unconventional myosin-IXa.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3408 g3408.t1 TTS g3408.t1 25226421 25226421
chr_3 g3408 g3408.t1 isoform g3408.t1 25227441 25238330
chr_3 g3408 g3408.t1 exon g3408.t1.exon1 25227441 25229045
chr_3 g3408 g3408.t1 cds g3408.t1.CDS1 25227441 25229045
chr_3 g3408 g3408.t1 exon g3408.t1.exon2 25229104 25229192
chr_3 g3408 g3408.t1 cds g3408.t1.CDS2 25229104 25229192
chr_3 g3408 g3408.t1 exon g3408.t1.exon3 25229260 25230198
chr_3 g3408 g3408.t1 cds g3408.t1.CDS3 25229260 25230198
chr_3 g3408 g3408.t1 exon g3408.t1.exon4 25230491 25231910
chr_3 g3408 g3408.t1 cds g3408.t1.CDS4 25230491 25231910
chr_3 g3408 g3408.t1 exon g3408.t1.exon5 25232242 25232325
chr_3 g3408 g3408.t1 cds g3408.t1.CDS5 25232242 25232325
chr_3 g3408 g3408.t1 exon g3408.t1.exon6 25232405 25232594
chr_3 g3408 g3408.t1 cds g3408.t1.CDS6 25232405 25232594
chr_3 g3408 g3408.t1 exon g3408.t1.exon7 25233087 25233374
chr_3 g3408 g3408.t1 cds g3408.t1.CDS7 25233087 25233374
chr_3 g3408 g3408.t1 exon g3408.t1.exon8 25233918 25234183
chr_3 g3408 g3408.t1 cds g3408.t1.CDS8 25233918 25234183
chr_3 g3408 g3408.t1 exon g3408.t1.exon9 25234262 25234397
chr_3 g3408 g3408.t1 cds g3408.t1.CDS9 25234262 25234397
chr_3 g3408 g3408.t1 exon g3408.t1.exon10 25234457 25234599
chr_3 g3408 g3408.t1 cds g3408.t1.CDS10 25234457 25234599
chr_3 g3408 g3408.t1 exon g3408.t1.exon11 25234714 25234959
chr_3 g3408 g3408.t1 cds g3408.t1.CDS11 25234714 25234959
chr_3 g3408 g3408.t1 exon g3408.t1.exon12 25235019 25235543
chr_3 g3408 g3408.t1 cds g3408.t1.CDS12 25235019 25235543
chr_3 g3408 g3408.t1 exon g3408.t1.exon13 25235657 25235863
chr_3 g3408 g3408.t1 cds g3408.t1.CDS13 25235657 25235863
chr_3 g3408 g3408.t1 exon g3408.t1.exon14 25236119 25236709
chr_3 g3408 g3408.t1 cds g3408.t1.CDS14 25236119 25236709
chr_3 g3408 g3408.t1 exon g3408.t1.exon15 25238286 25238330
chr_3 g3408 g3408.t1 cds g3408.t1.CDS15 25238286 25238330
chr_3 g3408 g3408.t1 TSS g3408.t1 25238956 25238956

Sequences

>g3408.t1 Gene=g3408 Length=6774
ATGCATTCGCAGGATACAAATGAAAACTCGAGATATGTGCTACAGGTTTATGTTGGAGCT
TTGTCAGTGCATTATGAAGCGTTGAGTGTAGAAGCTTCAAAGCAAACTTCAGCTGAGGAG
ATTGTAACGTGCATTGCAGAGCGATTAGGATTGACAGGAAATAATTATGAGTTAGCGGAA
GTCATTGGAAATTGTAAGGAGCGACGATTATCGTCACACGAGAAGCCCGTATCACTAAAG
CTGCTCTGGCCAAAACATTCTGATCCGAATTTTGGACGATTTTATTTGCGCGAAAAACAG
ACCAATGAACCAACTTGGTATGGTTTTGATCCGCAAGTTTTGAAAGAGTTTCTCTCCCAG
CCAGAAAATCGTGAATATCCTGACTTGTGCCAACTACCTGATTTAAATGAATCCACTCTT
CTGGAGAATCTCAGACAACGCTTTGAAGCAGGACATATATACACTTATGTCGGATCAATA
CTCATTGCAGTTAATCCATTTAGATTTTTACCTATCTATAATCCAAAATATGTGCGACTT
TATCAAAATCAACGTATTGGTCTTTTATTACCCCCACACATTTTTGCCATTGCCGATAAT
GCTTATTACTGCATGCTAAAAGAAAAGCGTAATCAGTGTGTGGTCATCTCGGGCGAAAGT
GGCTCGGGTAAGACTGAGAGCACAAACTTTCTGTTACATCATCTCACAGCGCTTTCGCAA
AAAGGTTCTCATGGATCTGGAGTAGAACAAACTATTTTGAGTGCAGGACCAGTACTGGAA
GCATTTGGAAATGCAAAAACTGCACACAATAATAACTCGAGTCGTTTTGGAAAGTTTATA
CAAGTAAATTATCGCGAAAATGGTATGGTTCAAGGAGCTGTTGTTCAAAAGTACCTGCTT
GAAAAGAGTAGAATAGTGTCACAGGGAACTTATGAGCGTAATTATCATGTGTTTTATTAT
TTATTATCTGGTGCCACTGAAAGCGAACGTGAAGCTCTTCATCTTTTACCGCCTGAAAAA
TACAACTATTTGAATGCCAAAAATCTTACATTAGAGAATTGCGATGAAAAGTATGAATTT
TCACGTCTAAAGCAAAGCATGGAAATGGTTGGATTTTCACCTGAAAAACAACGTCGTTTG
TTTATGGTATTATCAGCTGTATTGCTTCTGGGTAATGTAGAATTTCATCCTAAAAAATCA
GCATATCATCATGATGAAAGCGTGCATGTAAAGAATCTCGATGTTGTACATTTAATATCA
GAATTACTTAAAGTCAAGTACGAAACATTACTAGCAGCGTTGACATCAAAACGCGTGAAA
GCGAGTGACGAAACGCTCATCATGCAATATAAATTACCAGAAGCAATTGCGGCACGTGAT
GCTTTGGCAAAGTGTTTATATGGTGCACTCTTCGATTGGATTGTGCTACAAGTTAATCAT
GCACTTCTCAGTAAAGATCAAACTGCCGTTAATACTAATAACATGGGAAATTCAATTTCC
AATTCTATCGGTGTGCTAGACATATTCGGATTTGAAGATTTTTCTTTTCAAAATTATTTT
GAGCAGCTTTGCATCAACTATGCCAACGAACATTTGCAATACTACTTCAATTTGCACGTT
TTTAAATATGAACAAAAAGAATATAAGCGTGAGGGAATCAAATGGACTGATATTGAGTTT
ATGGATAATTCTGGATGCTTACATCTTTTTGAATCGAAGCCAACTGGTTTGCTTTGTATT
CTTGATGATTCTTGCAACTTTCCTGGCGGTAGCAATGAAAATTTACTTCATAAATTTAAT
AATATTCACAAAGACAATCCATTTTATGAGAAACCTCAAAAAAAAGAAAACGCTTTTATA
ATTAAACATTATGCTGGTAAAGTTAAATATCAGGTCGCTGAAATGCGTGAGAAAAATTTA
GATCTTATGAGACAAGATATAGTGAGTGTTCTTAAGAATTCTAATATGGCATTTGTACGC
GAGTTAGTTGGAGCTGATCCAGTTGCAGTTTTTCGTTGGGCGATTCTAAGGGCTTTTTTC
CGTGGTTATTTTGCATTTAGATCAGCTGGCATGAAACATCGTAGAGAAAGAACAGATCAA
TCATTGAGTAAAATTACAACAAAAGCACGTTTTAGAACAGGAAATGAAAGTCTAGTTAGT
AAACGAATCAATTCCACAACGACCTTTATGGCGTTGAACGCAAACAACGAAGCAACAACG
AATTTTATACATCATCGTGTCCATAACAGTCCTCTACATCAGGTTACAACTCCACCGCGC
CGTTCTTGGTCAACTTTTACATTTAATAATAAAAACTTCCCAGATGGAAAACTCAGCTAT
GAAAGTCAACAAATAAGTGGCGATCGCAGCTCTTGGAGAAATGATGAGATTATAAGATCG
CGTGATGGACGACAGGATGTTATGGCACGAGCTTCTCAAATTGTTATGAAGAACAAATCA
TTTAGACCGCGAGAAAGACCGAAGAAAGGGTTAAAGAATTTACAATCAGTTAAAACACTA
ACAGCTGGTCAAAATTTAATTAACAATCAAACTGCTGTGAAAACTCGAAAACAGCCACTT
ACTGTTACTGCACAATTTCAAAATTCATTAATAGCTCTCATGGAGACACTCAATCAGGCG
AATCCATTTTTCATAAGATGCATTAAATCGAATTCTAACAAGATTCCTAATCAGTTTGAC
GATGCGACAGTGACAAGACAGTTACGTTACACTGGAATGCTAGAAACAGTTCGAATTCGC
CGTGCCGGATATAATGTTAGATTAACATATGAAGAATTTATTCAGCATTATCGAATTTTG
TTGCCAAAAGGATTGTTGAGCTCACAAAAGGATGTACGAGATTTCATGAATCATCTTATG
GTTTTGAATAATCAACATTATCAATTAGGTATAACAAAAATTTACATGCGTGAAAGTGAA
AAAATGCGTTTGGATATAAAATTACATACGAAAATCATTGAGTCAATCGTATTTATTCAA
CGCTGGTTTAGAGGTATATTGCAGCGACAAAAGTTTTTACATCAAAAACAGGCTGCAATT
ATCATTCAAGCAAACTGGCGTATGTGCATAGCACAAAAGAAATATATTTTTCATCGTGCT
TGTTATCACGGTGCGGCAATTACAATTCAAGCCGCATGGCGAATGTACGTTGAGAGGAAA
AAGTATATGAATCTTCGACGTACAATTATACTCTTGCAAGCACATATTAGAGGTAAATTA
GCTAGAGCAAAATTCAAACAAAGTCAACCACAAAAGCATATGCGTGATCGTCAAAAGTTA
CGATCAACACAAAGTTTACCAGTACATGAACGAAGTACTGATGTGCATTTTGAACAAATG
AAGAGACGTACCCCAACACCTCATTACAGCTTAGACGCTGAAGTAGAATTATGTTCTGAA
GCACATGAATCTCCAAGTCATAGACTATCAAAACAGAAACGTGATCAAATGTTAGATCAA
ACTGAGCAACAAATTAGAGATTTATTAATTTATAAAGATGAGCAATATCAGTTCAGGAAG
TCTTCAGTTCCAACAATTGACTCTTATTATCCGTCATATCAAACACCACAATCAGCACCA
TCTTCATCAATAACAACAACGTCTGCCACAAATTATCGTCACAATGATGTTTTAGATTTA
GGCTCAAGAGTATATGACGTTGAAAAAGCTATGCGAAGAAATAACAACAATAATGATGAA
CCACCAACAGAAGCAGCCTTGAAGCGCTTCGATATTACAAAAATGCCAATTCGTCGTGTC
GATTCAGGACCATCAAGACGCGATATTCGTTTTGATTCGAAGACAAATGTTCAAATAACA
CCTCGACCAACACCTGCCACCGATGTGGAAATCGTTTTTGTGAATTCAAATCAACAATCA
ACACCATCGGTTCCTAATACAACACCACCGCCAATAATCGCAACTTCAACATCTTCCATT
TCACAAAGTCTTCGATCAAGTCCTTATAATCAGCAGTATAGTCTTGAAACTTTGCCACAG
AGAAGAGATATCGTTTGTAGAAGTTTAAATGAACAAAATTTCCAACCACCGATTGTGTAT
CATAATCAACAACAACAGCAACATAATGATAATGTCATTCGATCGAGTGGACCTCCAAAG
GGCAAAGCTGCTGCTCTATTGGGTACAATATCGGAAACGAACAAGCATGGCAAGAAAGAG
ATGACAGATATTCTAAGTAAAAATAAACGAACGAAAAATAATATGAGTGAAGAGATGACG
AGTGGATCATACATAGCATCAAAAGCAAATAAATTAGACGCAACATTATCGCGAAGAAAC
TCAGATCCAGCTAATAAAATTTCTTTATTAGAAACGAATCGTGGTAATGATTTGTATCAA
TCAAGCACAAATATTAATATTGGTGGTCATCGATTCCGTAAAGTTACGCGAATAAATAAG
AGTGAGCGATGTGCAAGCTGTGACGAGAGTGATTCATTTATATCAGAAGGTCACCGATGC
CTCGACTGTAAAATCTTAGTACACACGAAATGTATTCAAAACGGTGGAATTAAAAGTATT
AAGTGTGGTGCAAAACGATCAACAAAGCGAACGAAAAAAGTTAGTGAGCGCGAAAAAATT
AGTTCAGGTGCTGCAACAACACCTAATTCGAAATTTAGCGGCACAAAAGAGTACACAGAT
TCGACCGACAAGATCATAAGTGACGCAAAAGAACTTCAACTAATGCAGGATTTTATTACA
CAGAAAATTTGTAAAATGGAAGGTGATAAGGTGTCTGAGGTTGATCGTGTATTCAAGCAA
GCACTGAGAGAATTCAAAGATAATCTGGTTGCACAATATAGTGTAGCTCATAAACAAAAC
AGCGATTCTTTGAATATCAAATATCGAGATTTAATTGCCAATTTTGAACAAGTCATAGAA
ACAGCATGCGGCAAAACAGATGATTTTCCGAAAACAATGGGCGTAAATGCTTTCCGTGGC
TTTATGAATGAATTTATGAATTCTCGAGAGGCTGATAAGCCCAAAATGAAAAGAAAAAAG
GATAAAAAGAGGAAAGCTGATGAACTTGTGCTCTTTAATGGTCATGTGTTCCAATTGACA
ATCATGAATATTGCTACAGTTTGTGAAAATTGCCAACAATTTTTACTTTGGCCAATTGAA
CGTGGACTAGTCTGTATAAATTGTTCATTTACTGTTCATAAAAAATGTCACTTAAAAGCA
CCAATGTGCAGTAAACCAACAAGTGCAAGTGGAAATGGAGAAGGTGGAAATAATGAGGGT
GGAAAACTTTTTAAAGTACCATTAACACAACTTTGTGCTTCAGAAGGCAATGGAACAAAA
ATACCAATTCGAATTGATCAGTTAATTACTAAAATTGAAATGCATGGACTATATGCAGAA
GGTTTATATAGGAAAAGTGGATTGTCTTCGAAAATCAAAGAATTACAGAAAAAAATGAAT
GAGCCAAGTAATAGTGAAATAGATTATGAATCATATAATGTACACGTCCTTACAAATGTT
CTTAAAACCTTTCTTCGTGACTTGCCAGAACCCTTGCTTACATTTGATCGTTATGACGAC
TTTTTACGAGCCGCCGATTTGTCAGATGAGTCTGATCGTGTTCAAACACTATTGTCATTA
ATTAAAAAACTACCTCCTGCCCATCATGCACTTCTCGAGCGAATTGTTTTTCATTTAGCT
CGTGTTGCCCAACGTGAAGAATACAATCGAATGTCTGCAAGTTCATTGGCTATTGTTTTT
GCGCCATGTGTTTTAAGAACTAATAGACCACTGCAAGCACAAGATAGTTTGAATGATATC
AGTCGTCAAACGAAATGTATGGAAACAATAATTACACAGAAAATGTTGAATATAAAAACA
ACTCTTGCCGATATCGATACGCTCGACACAGCTGCACATACTGCAACTACACGTTTGAGT
ACATTGAGAAGTTCTAAAGTGTTTACACAAGAAGAATTTACTTCAACATCTTCGAGAGCT
GGTCGAGAATCAGCTGAAGCTGAAGAAATGCTTTTAGAAGGTCACATTCAAGAGATTAAG
AAAGAAAAAGCATTACTCACGTCGACACTTCCTAGTCTTGCTCGAGCAACGTCAGATGAT
GATTTACTTTCTACTGATTTAGATGGTGAAGGAGGAAGTCTTGACGATTTAAGTAATAAA
GATAAAGACAATGATAGTCACAAAATAAGTCGTGATTCACGAGAAGTTAGTGTTGATTCA
GCTCTTAGTTCAGCAGACGGATGTTCTTCATCACCATCTGGTAATCAACGTTTCTCGACT
AACAGTAGTGCTGCAGGAGATGAAGAATTTGCTGTAAAATACAATTTACGTGAACAAAAT
ATTGATTATATTCCATCTATCTCAAGAACAAAACAACAAGGGGTAACAATTATTCATCAG
CAGCGTTCATCACAACAGTCAACTTCTCGAAATGTAGTGACGACATGTACAATAAGTCCC
ACTATGATGAAAAATGGAAGTGAAGGACGTGAACAGCGTGGATCAGATTTACAGCGGCAG
AAACCGATTGTAATGAGAAGTATAAGTGGCAGCGGATATGAGCAATCAAAAAAATGTGCA
ACTTCACCAATCAGCAGTGGTAGTGCTAGTAATATTGGACTGCAGAGAGCAGCTACAACT
ATGGCTGCAATAGACACATTAAATATTAACAACAATAATAACAATAATGATGACGATGAA
AATGGACGAAAATCAAAGAGTCAGAGTATTGAAGATGAACCAATTATGGTGTAA

>g3408.t1 Gene=g3408 Length=2257
MHSQDTNENSRYVLQVYVGALSVHYEALSVEASKQTSAEEIVTCIAERLGLTGNNYELAE
VIGNCKERRLSSHEKPVSLKLLWPKHSDPNFGRFYLREKQTNEPTWYGFDPQVLKEFLSQ
PENREYPDLCQLPDLNESTLLENLRQRFEAGHIYTYVGSILIAVNPFRFLPIYNPKYVRL
YQNQRIGLLLPPHIFAIADNAYYCMLKEKRNQCVVISGESGSGKTESTNFLLHHLTALSQ
KGSHGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVQGAVVQKYLL
EKSRIVSQGTYERNYHVFYYLLSGATESEREALHLLPPEKYNYLNAKNLTLENCDEKYEF
SRLKQSMEMVGFSPEKQRRLFMVLSAVLLLGNVEFHPKKSAYHHDESVHVKNLDVVHLIS
ELLKVKYETLLAALTSKRVKASDETLIMQYKLPEAIAARDALAKCLYGALFDWIVLQVNH
ALLSKDQTAVNTNNMGNSISNSIGVLDIFGFEDFSFQNYFEQLCINYANEHLQYYFNLHV
FKYEQKEYKREGIKWTDIEFMDNSGCLHLFESKPTGLLCILDDSCNFPGGSNENLLHKFN
NIHKDNPFYEKPQKKENAFIIKHYAGKVKYQVAEMREKNLDLMRQDIVSVLKNSNMAFVR
ELVGADPVAVFRWAILRAFFRGYFAFRSAGMKHRRERTDQSLSKITTKARFRTGNESLVS
KRINSTTTFMALNANNEATTNFIHHRVHNSPLHQVTTPPRRSWSTFTFNNKNFPDGKLSY
ESQQISGDRSSWRNDEIIRSRDGRQDVMARASQIVMKNKSFRPRERPKKGLKNLQSVKTL
TAGQNLINNQTAVKTRKQPLTVTAQFQNSLIALMETLNQANPFFIRCIKSNSNKIPNQFD
DATVTRQLRYTGMLETVRIRRAGYNVRLTYEEFIQHYRILLPKGLLSSQKDVRDFMNHLM
VLNNQHYQLGITKIYMRESEKMRLDIKLHTKIIESIVFIQRWFRGILQRQKFLHQKQAAI
IIQANWRMCIAQKKYIFHRACYHGAAITIQAAWRMYVERKKYMNLRRTIILLQAHIRGKL
ARAKFKQSQPQKHMRDRQKLRSTQSLPVHERSTDVHFEQMKRRTPTPHYSLDAEVELCSE
AHESPSHRLSKQKRDQMLDQTEQQIRDLLIYKDEQYQFRKSSVPTIDSYYPSYQTPQSAP
SSSITTTSATNYRHNDVLDLGSRVYDVEKAMRRNNNNNDEPPTEAALKRFDITKMPIRRV
DSGPSRRDIRFDSKTNVQITPRPTPATDVEIVFVNSNQQSTPSVPNTTPPPIIATSTSSI
SQSLRSSPYNQQYSLETLPQRRDIVCRSLNEQNFQPPIVYHNQQQQQHNDNVIRSSGPPK
GKAAALLGTISETNKHGKKEMTDILSKNKRTKNNMSEEMTSGSYIASKANKLDATLSRRN
SDPANKISLLETNRGNDLYQSSTNINIGGHRFRKVTRINKSERCASCDESDSFISEGHRC
LDCKILVHTKCIQNGGIKSIKCGAKRSTKRTKKVSEREKISSGAATTPNSKFSGTKEYTD
STDKIISDAKELQLMQDFITQKICKMEGDKVSEVDRVFKQALREFKDNLVAQYSVAHKQN
SDSLNIKYRDLIANFEQVIETACGKTDDFPKTMGVNAFRGFMNEFMNSREADKPKMKRKK
DKKRKADELVLFNGHVFQLTIMNIATVCENCQQFLLWPIERGLVCINCSFTVHKKCHLKA
PMCSKPTSASGNGEGGNNEGGKLFKVPLTQLCASEGNGTKIPIRIDQLITKIEMHGLYAE
GLYRKSGLSSKIKELQKKMNEPSNSEIDYESYNVHVLTNVLKTFLRDLPEPLLTFDRYDD
FLRAADLSDESDRVQTLLSLIKKLPPAHHALLERIVFHLARVAQREEYNRMSASSLAIVF
APCVLRTNRPLQAQDSLNDISRQTKCMETIITQKMLNIKTTLADIDTLDTAAHTATTRLS
TLRSSKVFTQEEFTSTSSRAGRESAEAEEMLLEGHIQEIKKEKALLTSTLPSLARATSDD
DLLSTDLDGEGGSLDDLSNKDKDNDSHKISRDSREVSVDSALSSADGCSSSPSGNQRFST
NSSAAGDEEFAVKYNLREQNIDYIPSISRTKQQGVTIIHQQRSSQQSTSRNVVTTCTISP
TMMKNGSEGREQRGSDLQRQKPIVMRSISGSGYEQSKKCATSPISSGSASNIGLQRAATT
MAAIDTLNINNNNNNNDDDENGRKSKSQSIEDEPIMV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
32 g3408.t1 CDD cd01385 MYSc_Myo9 139 977 0.0
31 g3408.t1 CDD cd00029 C1 1695 1743 1.61403E-7
30 g3408.t1 Coils Coil Coil 2002 2022 -
22 g3408.t1 Gene3D G3DSA:3.10.20.90 - 1 107 2.0E-9
26 g3408.t1 Gene3D G3DSA:3.40.850.10 Kinesin 839 923 7.8E-13
23 g3408.t1 Gene3D G3DSA:3.30.70.3240 - 924 987 2.0E-7
27 g3408.t1 Gene3D G3DSA:1.20.5.190 - 992 1035 2.3E-7
28 g3408.t1 Gene3D G3DSA:1.20.5.190 - 1042 1093 3.3E-11
25 g3408.t1 Gene3D G3DSA:3.30.60.20 - 1456 1536 1.1E-6
24 g3408.t1 Gene3D G3DSA:3.30.60.20 - 1679 1755 3.9E-12
29 g3408.t1 Gene3D G3DSA:1.10.555.10 - 1756 1970 1.7E-64
48 g3408.t1 MobiDBLite mobidb-lite consensus disorder prediction 1083 1106 -
44 g3408.t1 MobiDBLite mobidb-lite consensus disorder prediction 1089 1104 -
45 g3408.t1 MobiDBLite mobidb-lite consensus disorder prediction 2053 2075 -
47 g3408.t1 MobiDBLite mobidb-lite consensus disorder prediction 2053 2104 -
43 g3408.t1 MobiDBLite mobidb-lite consensus disorder prediction 2076 2104 -
46 g3408.t1 MobiDBLite mobidb-lite consensus disorder prediction 2229 2257 -
10 g3408.t1 PANTHER PTHR46184 UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN 4 2115 0.0
13 g3408.t1 PRINTS PR00193 Myosin heavy chain signature 154 173 6.8E-41
15 g3408.t1 PRINTS PR00193 Myosin heavy chain signature 211 236 6.8E-41
11 g3408.t1 PRINTS PR00193 Myosin heavy chain signature 257 284 6.8E-41
14 g3408.t1 PRINTS PR00193 Myosin heavy chain signature 502 530 6.8E-41
12 g3408.t1 PRINTS PR00193 Myosin heavy chain signature 556 584 6.8E-41
8 g3408.t1 Pfam PF00788 Ras association (RalGDS/AF-6) domain 11 100 2.9E-10
2 g3408.t1 Pfam PF00063 Myosin head (motor domain) 128 731 4.6E-182
1 g3408.t1 Pfam PF00063 Myosin head (motor domain) 841 977 1.4E-33
4 g3408.t1 Pfam PF00612 IQ calmodulin-binding motif 994 1012 0.0099
7 g3408.t1 Pfam PF00612 IQ calmodulin-binding motif 1017 1035 0.003
5 g3408.t1 Pfam PF00612 IQ calmodulin-binding motif 1045 1062 4.0E-5
6 g3408.t1 Pfam PF00612 IQ calmodulin-binding motif 1067 1086 0.016
9 g3408.t1 Pfam PF00130 Phorbol esters/diacylglycerol binding domain (C1 domain) 1695 1745 2.3E-6
3 g3408.t1 Pfam PF00620 RhoGAP domain 1782 1928 3.1E-44
42 g3408.t1 ProSitePatterns PS00479 Zinc finger phorbol-ester/DAG-type signature. 1695 1743 -
55 g3408.t1 ProSiteProfiles PS50200 Ras-associating (RA) domain profile. 10 101 18.437
49 g3408.t1 ProSiteProfiles PS51456 Myosin motor domain profile. 124 989 243.729
50 g3408.t1 ProSiteProfiles PS50096 IQ motif profile. 994 1018 6.98
52 g3408.t1 ProSiteProfiles PS50096 IQ motif profile. 1015 1044 6.559
53 g3408.t1 ProSiteProfiles PS50096 IQ motif profile. 1042 1069 9.048
51 g3408.t1 ProSiteProfiles PS50096 IQ motif profile. 1065 1093 8.425
57 g3408.t1 ProSiteProfiles PS50081 Zinc finger phorbol-ester/DAG-type profile. 1469 1522 9.484
56 g3408.t1 ProSiteProfiles PS50081 Zinc finger phorbol-ester/DAG-type profile. 1694 1743 11.453
54 g3408.t1 ProSiteProfiles PS50238 Rho GTPase-activating proteins domain profile. 1766 1958 45.697
39 g3408.t1 SMART SM00314 RA_5 10 101 6.4E-11
41 g3408.t1 SMART SM00242 MYSc_2a 118 990 0.0
34 g3408.t1 SMART SM00015 iq_5 991 1013 0.0061
33 g3408.t1 SMART SM00015 iq_5 1014 1036 0.15
36 g3408.t1 SMART SM00015 iq_5 1041 1063 0.0074
35 g3408.t1 SMART SM00015 iq_5 1064 1086 0.88
38 g3408.t1 SMART SM00109 c1_12 1470 1522 1.9E-4
37 g3408.t1 SMART SM00109 c1_12 1693 1743 1.5E-4
40 g3408.t1 SMART SM00324 RhoGAP_3 1779 1955 6.6E-63
19 g3408.t1 SUPERFAMILY SSF54236 Ubiquitin-like 12 100 5.43E-9
20 g3408.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 119 1039 4.06E-252
21 g3408.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1040 1087 1.15E-5
17 g3408.t1 SUPERFAMILY SSF57889 Cysteine-rich domain 1464 1514 2.69E-7
16 g3408.t1 SUPERFAMILY SSF57889 Cysteine-rich domain 1682 1744 3.29E-13
18 g3408.t1 SUPERFAMILY SSF48350 GTPase activation domain, GAP 1760 1953 7.46E-53

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007165 signal transduction BP
GO:0005524 ATP binding MF
GO:0005515 protein binding MF
GO:0016459 myosin complex CC
GO:0003774 cytoskeletal motor activity MF
GO:0035556 intracellular signal transduction BP

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values