General information for g3409.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exportin-2.
Parent gene
- The parent gene g3409 is located on chr_3: 25243822..25244994 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3409 | g3409.t2 | TTS | g3409.t2 | 25240695 | 25240695 |
| chr_3 | g3409 | g3409.t2 | isoform | g3409.t2 | 25240769 | 25242089 |
| chr_3 | g3409 | g3409.t2 | exon | g3409.t2.exon1 | 25240769 | 25242089 |
| chr_3 | g3409 | g3409.t2 | cds | g3409.t2.CDS1 | 25240769 | 25242085 |
| chr_3 | g3409 | g3409.t2 | TSS | g3409.t2 | NA | NA |
Sequences
>g3409.t2 Gene=g3409 Length=1321
AAAAATGCTTATCATGAAGGATGCTAGTGGAAACAATATTATAACTCAAGAAATTTTGGC
ACCTTTCGCAGGAAGTGCAATTGAAGGATTATTCCAGGCATTAACAAAAGCAAACTCAAA
CGAAAATGAATATGTCATGAAGGCAATTATGCGAACTTTCAATACATTAAACGAACATTC
GATGCCATATATGGCAGCTGCTCTACCTAAGCTCACTGAAATTTTGACACAAGTTTCTAA
GAATCCATCAAAACCACATTTCAATCATTATCTGTTTGAGGCTATCGCCTTGGCAATCAA
AATTGTATGCAAAATTGAACCAAATGCTGTCTCTTCTTTTGAAGAAGCTCTGTTCCCACA
ATTTCAATATATTCTTCAAAATGATATAATGGAATTTTTGCCTTATGTCTTTCAATTGTT
GTCATTGCTCATGGAAATCAGACAAACGATTGGTCAAGTTCCTGAGCCATATTTTGCCCT
TTTTCCATGTTTATTAAGTCCAATTTTATGGGAACGACCAGGCAACATTACTCCATTAAT
GAGATTATTGTGTACATTTGTCAAACAAGCTTCACCACAAATAAAAGCTCAAGGAAAATT
AATGAGCGTGTTAGGTGTCTTTCAAAAAATGATTGCTTCTAAGGCAAACGATCATGAAGG
ATTTTACTTGCTTCAAAATTTGATCTCGTATTATCCAAGAGAAGATTTGGATCAAATTAT
GCCACAAGTTTTTACATTACTCTTTCAACGTTTAAGTTCATCGAAAACAACTAAATTTGT
AAAATCTCTCATCGTTCTTTTCACTTTTTATGCTGCAAAAATTGGTCCAAGTGAGCTTAT
TCAGTTAATCGATGGAATTCAAAATCAAATGTTTGGTATGGTTTGTCAACGTGTATTCAT
CACAGATTTGAACAAAGTATCAGGCGAAATTGAACGTAAAATTGTTGCAATTGGGATGTC
AAAAATTCTTTGCGATGCACCTGTAATGCTACAAGCTCCATATATCACCCATTGGCAATC
ACTCGTTCAAGTTTTAATTGAACTTTTTGAGCTACCACCAGATGAGTCAAATATTGAAGG
AGACAATTTCATAGAGGTCGACGATACAGCTGGTTATCAAGTAGCTTATTCTCAATTAAA
TTTTGCATCAGTTAAAAAAGACGATCCGTTTGCGGATGTGCCAGACATTCGACGATTTTT
GATTGAAAAGTTGAGTCGACTACAGCAACCTGAAATAAAATCAATGCTTCAACAAATATC
ATCTCAGCATCAAATTGCTCTACAAAAATATGCAAATCAATATGGAATTTCAATTATTTA
A
>g3409.t2 Gene=g3409 Length=438
MLIMKDASGNNIITQEILAPFAGSAIEGLFQALTKANSNENEYVMKAIMRTFNTLNEHSM
PYMAAALPKLTEILTQVSKNPSKPHFNHYLFEAIALAIKIVCKIEPNAVSSFEEALFPQF
QYILQNDIMEFLPYVFQLLSLLMEIRQTIGQVPEPYFALFPCLLSPILWERPGNITPLMR
LLCTFVKQASPQIKAQGKLMSVLGVFQKMIASKANDHEGFYLLQNLISYYPREDLDQIMP
QVFTLLFQRLSSSKTTKFVKSLIVLFTFYAAKIGPSELIQLIDGIQNQMFGMVCQRVFIT
DLNKVSGEIERKIVAIGMSKILCDAPVMLQAPYITHWQSLVQVLIELFELPPDESNIEGD
NFIEVDDTAGYQVAYSQLNFASVKKDDPFADVPDIRRFLIEKLSRLQQPEIKSMLQQISS
QHQIALQKYANQYGISII
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3409.t2 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 435 | 0 |
| 2 | g3409.t2 | PANTHER | PTHR10997 | IMPORTIN-7, 8, 11 | 1 | 432 | 0 |
| 3 | g3409.t2 | PANTHER | PTHR10997:SF8 | EXPORTIN-2 | 1 | 432 | 0 |
| 1 | g3409.t2 | Pfam | PF03378 | CAS/CSE protein, C-terminus | 1 | 429 | 0 |
| 4 | g3409.t2 | SUPERFAMILY | SSF48371 | ARM repeat | 13 | 417 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031267 | small GTPase binding | MF |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K18423 (exportin-2 (importin alpha re-exporter))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
