Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutathione S-transferase D7.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3417 g3417.t1 isoform g3417.t1 25259809 25260735
chr_3 g3417 g3417.t1 exon g3417.t1.exon1 25259809 25259976
chr_3 g3417 g3417.t1 cds g3417.t1.CDS1 25259809 25259976
chr_3 g3417 g3417.t1 exon g3417.t1.exon2 25260046 25260086
chr_3 g3417 g3417.t1 cds g3417.t1.CDS2 25260046 25260086
chr_3 g3417 g3417.t1 exon g3417.t1.exon3 25260211 25260604
chr_3 g3417 g3417.t1 cds g3417.t1.CDS3 25260211 25260604
chr_3 g3417 g3417.t1 exon g3417.t1.exon4 25260673 25260735
chr_3 g3417 g3417.t1 cds g3417.t1.CDS4 25260673 25260735
chr_3 g3417 g3417.t1 TSS g3417.t1 NA NA
chr_3 g3417 g3417.t1 TTS g3417.t1 NA NA

Sequences

>g3417.t1 Gene=g3417 Length=666
ATGAATTTATATTATTTGGATGTGTCTCCACCTTGCCGTACTGTGCTTTTGTTAGGAAAA
ATATTAGGCCTCGAATTTAATTTAAAAACTGTTAATATCCAAAGTAAAGATCAATTGAAA
AAGGAATTTTTAGATCTTAATCCCACTCATACAGTACCAACTATTCAATTTACTGATTCG
AATTTAGTTCTTTGGGAGTCACGTGTTATATTGACATACCTTGTAAATGCTTTTGGAAAA
GATGAGCACGCATACCTTTATCCGAATGATGTCGATAAAAGAGCAATAGTTGATTTATAT
CTACAATTTGACTTGTCAACGCTTTATCAAAGGATGCATGACTACTTTTTTCCTACAATT
CTTCTTGGCGCACCACTCGATGAAACTAAAAAAGCAAAGCTTGCAGAAGGTCTGAGATAT
TTCGAAAATATGCTCAAAGCCGATAAATTATTTGCAACAGGCAATGATTTTACAATAGCT
GATCTATCCTTATGTATCACCGTATCACAAATCGAAGCATTTAACTTTGACATGCTGCCT
TATCCTAAAGTACGAAAATGGTTGGCTCTCTGTAAACATGAACTTGAGCCTTATGACTAT
GATGAAATAAATACAACTGCTGCTACAATTTTAGCTTCAATTTTTCGAAGCAAACTTAGG
CCATAA

>g3417.t1 Gene=g3417 Length=221
MNLYYLDVSPPCRTVLLLGKILGLEFNLKTVNIQSKDQLKKEFLDLNPTHTVPTIQFTDS
NLVLWESRVILTYLVNAFGKDEHAYLYPNDVDKRAIVDLYLQFDLSTLYQRMHDYFFPTI
LLGAPLDETKKAKLAEGLRYFENMLKADKLFATGNDFTIADLSLCITVSQIEAFNFDMLP
YPKVRKWLALCKHELEPYDYDEINTTAATILASIFRSKLRP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g3417.t1 CDD cd03045 GST_N_Delta_Epsilon 1 76 0.0000000
11 g3417.t1 CDD cd03177 GST_C_Delta_Epsilon 93 212 0.0000000
8 g3417.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 81 0.0000000
7 g3417.t1 Gene3D G3DSA:1.20.1050.10 - 82 221 0.0000000
3 g3417.t1 PANTHER PTHR43969:SF2 GLUTATHIONE S TRANSFERASE D11, ISOFORM B 3 219 0.0000000
4 g3417.t1 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 3 219 0.0000000
1 g3417.t1 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 79 0.0000000
2 g3417.t1 Pfam PF14497 Glutathione S-transferase, C-terminal domain 127 188 0.0000011
10 g3417.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 82 19.7150000
9 g3417.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 90 221 15.6400000
13 g3417.t1 SFLD SFLDG00358 Main (cytGST) 1 218 0.0000000
14 g3417.t1 SFLD SFLDG01153 Main.4: Theta-like 1 218 0.0000000
5 g3417.t1 SUPERFAMILY SSF52833 Thioredoxin-like 1 87 0.0000000
6 g3417.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 90 193 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed