General information for g3442.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Acyl-CoA:lysophosphatidylglycerol acyltransferase 1.
Parent gene
- The parent gene g3442 is located on chr_3: 25485261..25486662 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3442 | g3442.t7 | TSS | g3442.t7 | 25479721 | 25479721 |
| chr_3 | g3442 | g3442.t7 | isoform | g3442.t7 | 25479793 | 25484681 |
| chr_3 | g3442 | g3442.t7 | exon | g3442.t7.exon1 | 25479793 | 25480020 |
| chr_3 | g3442 | g3442.t7 | exon | g3442.t7.exon2 | 25483297 | 25483396 |
| chr_3 | g3442 | g3442.t7 | cds | g3442.t7.CDS1 | 25483377 | 25483396 |
| chr_3 | g3442 | g3442.t7 | exon | g3442.t7.exon3 | 25483482 | 25483627 |
| chr_3 | g3442 | g3442.t7 | cds | g3442.t7.CDS2 | 25483482 | 25483627 |
| chr_3 | g3442 | g3442.t7 | exon | g3442.t7.exon4 | 25483937 | 25484136 |
| chr_3 | g3442 | g3442.t7 | cds | g3442.t7.CDS3 | 25483937 | 25484136 |
| chr_3 | g3442 | g3442.t7 | exon | g3442.t7.exon5 | 25484199 | 25484276 |
| chr_3 | g3442 | g3442.t7 | cds | g3442.t7.CDS4 | 25484199 | 25484276 |
| chr_3 | g3442 | g3442.t7 | exon | g3442.t7.exon6 | 25484366 | 25484433 |
| chr_3 | g3442 | g3442.t7 | cds | g3442.t7.CDS5 | 25484366 | 25484433 |
| chr_3 | g3442 | g3442.t7 | exon | g3442.t7.exon7 | 25484570 | 25484601 |
| chr_3 | g3442 | g3442.t7 | cds | g3442.t7.CDS6 | 25484570 | 25484601 |
| chr_3 | g3442 | g3442.t7 | exon | g3442.t7.exon8 | 25484669 | 25484681 |
| chr_3 | g3442 | g3442.t7 | cds | g3442.t7.CDS7 | 25484669 | 25484679 |
| chr_3 | g3442 | g3442.t7 | TTS | g3442.t7 | 25485585 | 25485585 |
Sequences
>g3442.t7 Gene=g3442 Length=865
AGTACCAATATTTTTTATTTACTACTAATTTTAGTGCTTTAAAGTCGACGAGTGTTTGAT
GAATGAATAAAATAAAGGTGTTTTAAAAAGTGTATTTTAGATTAGTTTGTATTTATAATT
TTCTTAAAAATATTTATGACGAAAATTGAGATCAGAAAAAAGAAGAATTAGAAGCTACTT
ATAATTTTCATTTGAGTAATTTTTCCTATTTGTTCAAGATTGAGCAAGAACGAAGTCCAC
TTTTAACATCATCAGACTCTGAAAAAGACTTATATGAATGTGAAAGACAAATTGCAGGAG
TGAACAAAATGCCATCTGAATGTTTTGAAAATATTATTAAATATCCGCGAGCAATTTTGC
GGGTACTTTTTGTGATAGTGAATAATATATATTGTATTCCAACTTATTTGATATGGATGT
TTCTATTATTACCACTGAAGAAATTACATCCCGATACGTTTTATTGGATTGAAGGTAAAT
TTTTCCATTGGTTACTCGCAAATGTGACAATGTGGAGTTATACTGCGGGCTATGACATAG
TTGAGCTAGGAGATGACATAACACCGACTTTAGATCAACGTACTTTGGTACTAGTCAATC
ATCAATCAACTGCTGATGTGCCTATGCTTATGTCAACTTTTAATACCAAGCAAGAAGTGT
TACCGAACATAATGTGGATAATGGACAAAATTTTTATGTACACAAATTTTGGTATTGTCA
GTTTGATTCATCAAGATTTTTTTATTGGTTCTGGACCGAAACAACGTGATTTGGCGTTAG
TTCAATTGAGAGAACATATAGAAAAATCATATATTCCGAGACGGAGGGAGTGGATGGTAC
TCTTTCCTGAAGGCGGATTTTTAAG
>g3442.t7 Gene=g3442 Length=185
MPSECFENIIKYPRAILRVLFVIVNNIYCIPTYLIWMFLLLPLKKLHPDTFYWIEGKFFH
WLLANVTMWSYTAGYDIVELGDDITPTLDQRTLVLVNHQSTADVPMLMSTFNTKQEVLPN
IMWIMDKIFMYTNFGIVSLIHQDFFIGSGPKQRDLALVQLREHIEKSYIPRRREWMVLFP
EGGFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3442.t7 | PANTHER | PTHR10983:SF2 | ACYL-COA:LYSOPHOSPHATIDYLGLYCEROL ACYLTRANSFERASE 1 | 8 | 185 | 9.3E-76 |
| 3 | g3442.t7 | PANTHER | PTHR10983 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED | 8 | 185 | 9.3E-76 |
| 1 | g3442.t7 | Pfam | PF01553 | Acyltransferase | 89 | 183 | 3.9E-6 |
| 7 | g3442.t7 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 14 | - |
| 8 | g3442.t7 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 15 | 41 | - |
| 6 | g3442.t7 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 42 | 185 | - |
| 5 | g3442.t7 | SUPERFAMILY | SSF69593 | Glycerol-3-phosphate (1)-acyltransferase | 16 | 183 | 5.49E-6 |
| 4 | g3442.t7 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 19 | 41 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed