Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable maleylacetoacetate isomerase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3485 g3485.t1 TSS g3485.t1 25939374 25939374
chr_3 g3485 g3485.t1 isoform g3485.t1 25939401 25940129
chr_3 g3485 g3485.t1 exon g3485.t1.exon1 25939401 25939945
chr_3 g3485 g3485.t1 cds g3485.t1.CDS1 25939401 25939945
chr_3 g3485 g3485.t1 exon g3485.t1.exon2 25940003 25940129
chr_3 g3485 g3485.t1 cds g3485.t1.CDS2 25940003 25940129
chr_3 g3485 g3485.t1 TTS g3485.t1 25940278 25940278

Sequences

>g3485.t1 Gene=g3485 Length=672
ATGTCATCTAATGAAGAACTTCTTGATAATACACAGCCAATACTTTATTCTTACTGGCGC
TCGAGTTGCAGTTGGAGAGTCCGAATATGCCTCAATCTCAAGGAAATTCCTTATGATATA
AAGCCAATTAGCTTGATCAAATCAGGCGGTGAGCAGCATTGTAATGAATATCGCGAAGTC
AATCCAATGGAGCAAGTACCCGCATTACAAATTGATGGTCACACACTCGTTGAATCACTG
GCAATAATGCAGTATTTAGAAGAAACGCGACCACAACGTCCACTCATGCCGCAGGACTTC
CATAAGCGAGCTAAAGTTCGTGAATTATGTGAAATTATTGCATCAGGAATTCAACCATTG
CAGAATTTGATTGTGCTGATTCATGTTGGTGAAGAAAAGAAAAAAGAATGGGCACAACAT
TGGATCACGAGAGGATTTAGAGCTGTTGAAAAACTTTTATCTACTAGCGCTGGCAAGTAT
TGTGTCGGTGATGAAATCACCCTTGCTGACTGCTGTCTGATTCCTCAAGTTTTTAATGCC
AGAAGATTTCATGTAGATTTGAGACCTTTCCCAATAATTCTCAGAATTGATCGTGAATTG
GAATCTCACCCTGCTTTTCGAGCTGCACATCCATCATCACAACCAGATTCACCCCCAGAA
ATCACCAAATAA

>g3485.t1 Gene=g3485 Length=223
MSSNEELLDNTQPILYSYWRSSCSWRVRICLNLKEIPYDIKPISLIKSGGEQHCNEYREV
NPMEQVPALQIDGHTLVESLAIMQYLEETRPQRPLMPQDFHKRAKVRELCEIIASGIQPL
QNLIVLIHVGEEKKKEWAQHWITRGFRAVEKLLSTSAGKYCVGDEITLADCCLIPQVFNA
RRFHVDLRPFPIILRIDRELESHPAFRAAHPSSQPDSPPEITK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g3485.t1 CDD cd03042 GST_N_Zeta 13 87 0.0000000
9 g3485.t1 CDD cd03191 GST_C_Zeta 101 214 0.0000000
8 g3485.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 15 91 0.0000000
7 g3485.t1 Gene3D G3DSA:1.20.1050.10 - 97 222 0.0000000
3 g3485.t1 PANTHER PTHR42673:SF4 MALEYLACETOACETATE ISOMERASE 11 220 0.0000000
4 g3485.t1 PANTHER PTHR42673 MALEYLACETOACETATE ISOMERASE 11 220 0.0000000
1 g3485.t1 Pfam PF13417 Glutathione S-transferase, N-terminal domain 15 94 0.0000000
2 g3485.t1 Pfam PF14497 Glutathione S-transferase, C-terminal domain 131 206 0.0000002
12 g3485.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 11 94 27.2250000
11 g3485.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 99 219 24.2400000
14 g3485.t1 SFLD SFLDG00358 Main (cytGST) 15 184 0.0000000
15 g3485.t1 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 15 184 0.0000000
5 g3485.t1 SUPERFAMILY SSF52833 Thioredoxin-like 12 98 0.0000000
6 g3485.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 95 218 0.0000000
13 g3485.t1 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 14 217 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009072 aromatic amino acid family metabolic process BP
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF
GO:0003824 catalytic activity MF
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values