Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable maleylacetoacetate isomerase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3485 g3485.t5 isoform g3485.t5 25938860 25940129
chr_3 g3485 g3485.t5 exon g3485.t5.exon1 25938860 25939020
chr_3 g3485 g3485.t5 TSS g3485.t5 25938878 25938878
chr_3 g3485 g3485.t5 exon g3485.t5.exon2 25939139 25939208
chr_3 g3485 g3485.t5 exon g3485.t5.exon3 25939437 25939945
chr_3 g3485 g3485.t5 cds g3485.t5.CDS1 25939587 25939945
chr_3 g3485 g3485.t5 exon g3485.t5.exon4 25940003 25940129
chr_3 g3485 g3485.t5 cds g3485.t5.CDS2 25940003 25940129
chr_3 g3485 g3485.t5 TTS g3485.t5 25940278 25940278

Sequences

>g3485.t5 Gene=g3485 Length=867
GCACAACCGGTGGTGAAATAAATTGAAGGATAACAAAACAGAAAGAAAAATATTTTTACT
TAAAAATTAAAATATTTATTTTCTAACATTCCATATCTTTACAAAAAATTTCCAAAATTA
ATTACTCAAAGTACAATAACTCCCTGCAACCAGGGATTAAGATTTTATGATTTGGTTATT
TTGTTTTTATCAAACCGCATTTTGTGTGATACATCATGAATAAACTGGCAACCAATACTT
TATTCTTACTGGCGCTCGAGTTGCAGTTGGAGAGTCCGAATATGCCTCAATCTCAAGGAA
ATTCCTTATGATATAAAGCCAATTAGCTTGATCAAATCAGGCGGTGAGCAGCATTGTAAT
GAATATCGCGAAGTCAATCCAATGGAGCAAGTACCCGCATTACAAATTGATGGTCACACA
CTCGTTGAATCACTGGCAATAATGCAGTATTTAGAAGAAACGCGACCACAACGTCCACTC
ATGCCGCAGGACTTCCATAAGCGAGCTAAAGTTCGTGAATTATGTGAAATTATTGCATCA
GGAATTCAACCATTGCAGAATTTGATTGTGCTGATTCATGTTGGTGAAGAAAAGAAAAAA
GAATGGGCACAACATTGGATCACGAGAGGATTTAGAGCTGTTGAAAAACTTTTATCTACT
AGCGCTGGCAAGTATTGTGTCGGTGATGAAATCACCCTTGCTGACTGCTGTCTGATTCCT
CAAGTTTTTAATGCCAGAAGATTTCATGTAGATTTGAGACCTTTCCCAATAATTCTCAGA
ATTGATCGTGAATTGGAATCTCACCCTGCTTTTCGAGCTGCACATCCATCATCACAACCA
GATTCACCCCCAGAAATCACCAAATAA

>g3485.t5 Gene=g3485 Length=161
MEQVPALQIDGHTLVESLAIMQYLEETRPQRPLMPQDFHKRAKVRELCEIIASGIQPLQN
LIVLIHVGEEKKKEWAQHWITRGFRAVEKLLSTSAGKYCVGDEITLADCCLIPQVFNARR
FHVDLRPFPIILRIDRELESHPAFRAAHPSSQPDSPPEITK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g3485.t5 CDD cd03191 GST_C_Zeta 39 152 0.0000000
8 g3485.t5 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 39 0.0000000
7 g3485.t5 Gene3D G3DSA:1.20.1050.10 - 40 160 0.0000000
3 g3485.t5 PANTHER PTHR42673:SF4 MALEYLACETOACETATE ISOMERASE 1 158 0.0000000
4 g3485.t5 PANTHER PTHR42673 MALEYLACETOACETATE ISOMERASE 1 158 0.0000000
1 g3485.t5 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 32 0.0000015
2 g3485.t5 Pfam PF14497 Glutathione S-transferase, C-terminal domain 69 144 0.0000001
11 g3485.t5 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 32 13.9650000
10 g3485.t5 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 37 157 24.2400000
13 g3485.t5 SFLD SFLDG00358 Main (cytGST) 2 126 0.0000000
14 g3485.t5 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 2 126 0.0000000
5 g3485.t5 SUPERFAMILY SSF52833 Thioredoxin-like 2 41 0.0000000
6 g3485.t5 SUPERFAMILY SSF47616 GST C-terminal domain-like 32 156 0.0000000
12 g3485.t5 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 1 155 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009072 aromatic amino acid family metabolic process BP
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF
GO:0003824 catalytic activity MF
GO:0005737 cytoplasm CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values