General information for g353.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Lysophospholipid acyltransferase 7.
Parent gene
- The parent gene g353 is located on chr_3: 2825642..2826985 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g353 | g353.t1 | TSS | g353.t1 | 2824110 | 2824110 |
| chr_3 | g353 | g353.t1 | isoform | g353.t1 | 2824163 | 2825642 |
| chr_3 | g353 | g353.t1 | exon | g353.t1.exon1 | 2824163 | 2824383 |
| chr_3 | g353 | g353.t1 | cds | g353.t1.CDS1 | 2824163 | 2824383 |
| chr_3 | g353 | g353.t1 | exon | g353.t1.exon2 | 2824433 | 2825642 |
| chr_3 | g353 | g353.t1 | cds | g353.t1.CDS2 | 2824433 | 2825642 |
| chr_3 | g353 | g353.t1 | TTS | g353.t1 | 2825828 | 2825828 |
Sequences
>g353.t1 Gene=g353 Length=1431
ATGTCCACTGAATTGAGACACGACGATCTGATTTATGGCATTGTGTTACTTCTCGGTATC
GGTTTCGGGCATTTTTATAGAAAAATCCGTGATATTTCAAATAAGAAACTGATTGGAACA
ATCTATGGCTTGTCAATAATTCTTTTCACATCAAAACTTCAATCATTCCACATCTTCATC
ACATTTTTTATCAGTTGCATTATCATCAAAGTCAATGAAAGGAAATGTCATTTAATTGTA
TTCTGGTTTATGATGGGATATTTGCTTTTTCTTCGAAATGTCACTTGGTTTGGTTTGTCA
GCTATGGTAGGACATGCAAACATGATTCAAATGATAATGACATTGAAGATTATTGGATTT
GCATTTGAGAAAAATACTGTAGTTACAAAGGTCAGAGATGCTGAGAAGAAGGGGGAAAAA
ATTGAGTTGAATGGTTATGAGAGAGCATTGAAAGAAAGTACAACTTTTGAAATCTTCCAT
TATTGTTTCAATTATATTGGATTGGTAACTGGTCCATATTACACTTACAAAACATTTTAC
GATTTCTTCCACTTGCCATTTAGTAAATATGTCGACTATTGGAAGTCAACTTTAGAGAGA
CTCAAATATGTTCCCATTTATGTCGTTCTTTTTCTTACTGCATCATACATTTGGCCACTC
GAATATGCTTCAACTAATGAATTTTATGAATCTCGTTCTTTTCTTTATCGTCTGTTTTTT
GTATGGCCAACTTTCTTCATCTTTCGAATGAGAATTTATAGTGGAATAATTTTGGCTGAA
TGTGTCTGCATTAGTGCAGGTTTTGGTGCATATCCCAAACAATTAAATACCAAATGTGGT
CATGGACCATCAGAAGAAATTACCAAAGAAATTATAGAAAGAGCTGATAAATTGGAATAC
GAATTTAAAACAATTGAAAATGTTGATGTAAAAAGTGTTGAAACATGCTACACGTTTAGA
GAAGCAATGAAGCACTGGAATAAGTGCATTCAGTATTGGCTTGCAATGTACATCTACAAG
AGATTTCCGAACAAGAAATATCGAGTTATTGCGACAATGCTTGTCTCATCATATTGGCAT
GGAGTTCATGCTGGATATTATTTTTGCATTCTCGGACCTATTTTTTATCTTCCAATTGAA
GATCTTTATTTAAAATTATTTAAATCTGAGTATCCACAAATTCAACAAATTTACAATGTG
TGCTTATGGATTTTGAAATTCTTTGCATTCAGTTATTTGGGAACTGCTTTCTTACTTAAA
GATGTCAAGAAAATTTGGTTCTATTATTCATCTGTTTACCATTTTGGTTATATTTTCTGG
GCTATTCTCTTTATCATCTGTTTAGTATTGTGGACACAAAAGAAACGTGCCATAAAGAGA
GCCGAAAAGAAAATAGAGGCGGCTATCGCTGAAGACAAAAAAGAAAACTAA
>g353.t1 Gene=g353 Length=476
MSTELRHDDLIYGIVLLLGIGFGHFYRKIRDISNKKLIGTIYGLSIILFTSKLQSFHIFI
TFFISCIIIKVNERKCHLIVFWFMMGYLLFLRNVTWFGLSAMVGHANMIQMIMTLKIIGF
AFEKNTVVTKVRDAEKKGEKIELNGYERALKESTTFEIFHYCFNYIGLVTGPYYTYKTFY
DFFHLPFSKYVDYWKSTLERLKYVPIYVVLFLTASYIWPLEYASTNEFYESRSFLYRLFF
VWPTFFIFRMRIYSGIILAECVCISAGFGAYPKQLNTKCGHGPSEEITKEIIERADKLEY
EFKTIENVDVKSVETCYTFREAMKHWNKCIQYWLAMYIYKRFPNKKYRVIATMLVSSYWH
GVHAGYYFCILGPIFYLPIEDLYLKLFKSEYPQIQQIYNVCLWILKFFAFSYLGTAFLLK
DVKKIWFYYSSVYHFGYIFWAILFIICLVLWTQKKRAIKRAEKKIEAAIAEDKKEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g353.t1 | PANTHER | PTHR13906 | PORCUPINE | 8 | 463 | 1.5E-145 |
| 3 | g353.t1 | PANTHER | PTHR13906:SF16 | LYSOPHOSPHOLIPID ACYLTRANSFERASE 7 | 8 | 463 | 1.5E-145 |
| 1 | g353.t1 | Pfam | PF03062 | MBOAT, membrane-bound O-acyltransferase family | 69 | 419 | 2.5E-31 |
| 16 | g353.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 8 | - |
| 25 | g353.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 9 | 26 | - |
| 20 | g353.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 27 | 45 | - |
| 29 | g353.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 46 | 69 | - |
| 14 | g353.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 70 | 75 | - |
| 33 | g353.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 76 | 96 | - |
| 21 | g353.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 97 | 101 | - |
| 24 | g353.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 102 | 122 | - |
| 18 | g353.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 123 | 157 | - |
| 27 | g353.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 158 | 176 | - |
| 19 | g353.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 177 | 202 | - |
| 28 | g353.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 203 | 222 | - |
| 13 | g353.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 223 | 233 | - |
| 31 | g353.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 234 | 252 | - |
| 23 | g353.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 253 | 357 | - |
| 26 | g353.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 358 | 379 | - |
| 15 | g353.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 380 | 399 | - |
| 30 | g353.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 400 | 419 | - |
| 22 | g353.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 420 | 424 | - |
| 32 | g353.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 425 | 451 | - |
| 17 | g353.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 452 | 476 | - |
| 11 | g353.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 10 | 29 | - |
| 6 | g353.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 42 | 64 | - |
| 10 | g353.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 101 | - |
| 9 | g353.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 161 | 183 | - |
| 4 | g353.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 203 | 220 | - |
| 12 | g353.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 233 | 252 | - |
| 8 | g353.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 362 | 384 | - |
| 7 | g353.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 397 | 419 | - |
| 5 | g353.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 429 | 451 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K13516 (lysophospholipid acyltransferase 7 [EC:2.3.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
