Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase 1-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3541 g3541.t1 TTS g3541.t1 26290235 26290235
chr_3 g3541 g3541.t1 isoform g3541.t1 26290320 26291115
chr_3 g3541 g3541.t1 exon g3541.t1.exon1 26290320 26290484
chr_3 g3541 g3541.t1 cds g3541.t1.CDS1 26290320 26290484
chr_3 g3541 g3541.t1 exon g3541.t1.exon2 26290545 26290715
chr_3 g3541 g3541.t1 cds g3541.t1.CDS2 26290545 26290715
chr_3 g3541 g3541.t1 exon g3541.t1.exon3 26290768 26291115
chr_3 g3541 g3541.t1 cds g3541.t1.CDS3 26290768 26291115
chr_3 g3541 g3541.t1 TSS g3541.t1 26291152 26291152

Sequences

>g3541.t1 Gene=g3541 Length=684
ATGGAAAGTAAATTAATTTTATATTTAACAAGAGGTTCACCTGCATGTCGATCAGTTTTA
CAATTGTGTCGCATACTTGATCTTAATGTTGAACTCAAAAATGTAAATTTTCAAGCTAAA
GAGCAAAAGAGTGAGACTTTTTCAAAATTAAATCCTTTAAAAGAAGTTCCCGTGCTTGTT
GATGGCGATTTTATTTTGTCTGAATCGCGAGCGATTTTAGCCTATCTTGTGAACTCAAAA
AAACCAAATAGCCCTCTTTATCCTTTTGATCCAAAAAGAAGAGCAATAATTGACCAACGA
TTATATTATGATGCAACAGTGCTTTTTCTATCTCATTCATCTATTGTTCGATCAGTAATT
TATGATGGTGCAAAAGATGTCACAGATCAGCAAAGAATAAATATTCTTTCAGTTTTAGAA
AATCTTAATTATTTCTTAAGTCAATCTAAATACTTCGCAAGTAATGAGGACATAACGATA
GCTGATATTTCAATTTTATCAAGTGTAATTACTATTTATGAGTGTGGACATGATTTAGAG
GCATTTCCTTATTTATCAAAATGGTTTCACAGTTTGGAAAATTTGCCTGGATTTCAGGAA
AATCAGGAACACACTCGAGATTTTGCAAAATTTTTTAAAAAGAAAATGGGACGTGCGATG
TTTGAGAAGAAACAAAAATTATAA

>g3541.t1 Gene=g3541 Length=227
MESKLILYLTRGSPACRSVLQLCRILDLNVELKNVNFQAKEQKSETFSKLNPLKEVPVLV
DGDFILSESRAILAYLVNSKKPNSPLYPFDPKRRAIIDQRLYYDATVLFLSHSSIVRSVI
YDGAKDVTDQQRINILSVLENLNYFLSQSKYFASNEDITIADISILSSVITIYECGHDLE
AFPYLSKWFHSLENLPGFQENQEHTRDFAKFFKKKMGRAMFEKKQKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g3541.t1 CDD cd03177 GST_C_Delta_Epsilon 92 209 0.000000
7 g3541.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 79 0.000000
6 g3541.t1 Gene3D G3DSA:1.20.1050.10 - 83 218 0.000000
3 g3541.t1 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 4 214 0.000000
1 g3541.t1 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 77 0.000000
2 g3541.t1 Pfam PF14497 Glutathione S-transferase, C-terminal domain 124 199 0.000024
9 g3541.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 3 84 20.155000
8 g3541.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 90 211 18.269000
11 g3541.t1 SFLD SFLDG01153 Main.4: Theta-like 4 216 0.000000
12 g3541.t1 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 4 216 0.000000
4 g3541.t1 SUPERFAMILY SSF52833 Thioredoxin-like 4 88 0.000000
5 g3541.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 90 204 0.000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values