Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase 1, isoform C.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3542 g3542.t3 TTS g3542.t3 26291404 26291404
chr_3 g3542 g3542.t3 isoform g3542.t3 26291440 26292206
chr_3 g3542 g3542.t3 exon g3542.t3.exon1 26291440 26292106
chr_3 g3542 g3542.t3 cds g3542.t3.CDS1 26291593 26292106
chr_3 g3542 g3542.t3 exon g3542.t3.exon2 26292160 26292206
chr_3 g3542 g3542.t3 cds g3542.t3.CDS2 26292160 26292206
chr_3 g3542 g3542.t3 TSS g3542.t3 26292226 26292226

Sequences

>g3542.t3 Gene=g3542 Length=714
ATGGGAAAGGTGACTTTATATTTTACAGCTGGTTCCATGCCATCACGAGCATGCTTGCTT
CTTTTGAGAACATTAAATGTTGATGTTGAGATAAAACAAGTCGATTTATTAGAAGGCGAA
CAGCACAATGAAAGTTTTCTTAAAATCAACCCTGTTGGTAAAATACCAGTTTTAGTTGAT
GATGGTTTTACTTTGTCTGAATCAAGAGCGATTTTGGCCTATTTGGTGAATAGTCGAAAG
CCAGGTGACAAACTTTATCCAACAGATGCAAAAAAAAGAGCTGTCATTGATCAGAGACTA
TATTATGATGCAACTGTAGTTTTTCCTGCTTTGGTTGCAATAGTTCGACCATCCTTATAT
AATAAAGTAACGGAAGTTTCACAAGAATCAAAAAACAATCTTATAAAAATCCTTCGGATA
CTTGAAGGATATTTGAAAGGTCATAATTATTTTGCTGGTGATGATCTGACTATTGCTGAT
TTTTCTATTTTGCCAAACATCACTTCAGTTGTGGTAAGTTTTATGATTAATCATTTATTA
AATACTATAAATTTCAATTGAAAGGAATTTGGATTTGATTTATCAAAAGAACTTCCAAAT
CTTGATAAATGGTACAAAAAGATGCAAAGTGTCCCAGGTTTTGATGAGAATAAGGCCGGT
GCAAAACTTTTGGCTGATATTATGACTAAAATCATTGGAACTTCTGTATTTTAA

>g3542.t3 Gene=g3542 Length=186
MGKVTLYFTAGSMPSRACLLLLRTLNVDVEIKQVDLLEGEQHNESFLKINPVGKIPVLVD
DGFTLSESRAILAYLVNSRKPGDKLYPTDAKKRAVIDQRLYYDATVVFPALVAIVRPSLY
NKVTEVSQESKNNLIKILRILEGYLKGHNYFAGDDLTIADFSILPNITSVVVSFMINHLL
NTINFN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g3542.t3 CDD cd03177 GST_C_Delta_Epsilon 91 172 0.0000000
8 g3542.t3 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 80 0.0000000
7 g3542.t3 Gene3D G3DSA:1.20.1050.10 - 82 181 0.0000000
3 g3542.t3 PANTHER PTHR43969:SF9 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 175 0.0000000
4 g3542.t3 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 175 0.0000000
2 g3542.t3 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 76 0.0000000
1 g3542.t3 Pfam PF00043 Glutathione S-transferase, C-terminal domain 117 165 0.0000087
10 g3542.t3 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 83 21.8770000
9 g3542.t3 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 89 186 16.5310000
12 g3542.t3 SFLD SFLDG00358 Main (cytGST) 3 172 0.0000000
13 g3542.t3 SFLD SFLDG01153 Main.4: Theta-like 3 172 0.0000000
5 g3542.t3 SUPERFAMILY SSF52833 Thioredoxin-like 1 87 0.0000000
6 g3542.t3 SUPERFAMILY SSF47616 GST C-terminal domain-like 81 171 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed