General information for g3564.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutamate dehydrogenase, mitochondrial.
Parent gene
- The parent gene g3564 is located on chr_3: 26458192..26459186 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3564 | g3564.t15 | isoform | g3564.t15 | 26457104 | 26457928 |
| chr_3 | g3564 | g3564.t15 | exon | g3564.t15.exon1 | 26457104 | 26457467 |
| chr_3 | g3564 | g3564.t15 | cds | g3564.t15.CDS1 | 26457251 | 26457467 |
| chr_3 | g3564 | g3564.t15 | exon | g3564.t15.exon2 | 26457630 | 26457818 |
| chr_3 | g3564 | g3564.t15 | cds | g3564.t15.CDS2 | 26457630 | 26457655 |
| chr_3 | g3564 | g3564.t15 | exon | g3564.t15.exon3 | 26457879 | 26457928 |
| chr_3 | g3564 | g3564.t15 | TSS | g3564.t15 | NA | NA |
| chr_3 | g3564 | g3564.t15 | TTS | g3564.t15 | NA | NA |
Sequences
>g3564.t15 Gene=g3564 Length=603
GTTCCATTTGGAGGAGCAAAGGCTGGAATCAGAATTAATCCGAAAGAATACTCAGAACAT
GAGTTAGAAAAGATTACACGTCGTTTTGCCCTTGAATTAGCAAAGAAAGGATTTATCGGA
CCAGGAGTCGATGTTCCTGCACCCGATATGGGAACTGGAGAACGCGAAATGAGCTGGATT
GCTGACACATATGCAAAGACCATTGGATATCAAGATATTAACGCACATGCTTGTATCACT
GGTAAACCAATTAATCAAGGAGGTATTCATGGAAGAGTTTCTGCTACAGGTCGTGGAGTG
TTCCATGGTCTCGAGAATTTTATTAATGAAGCATCATATATGAGTCAAATTGGAACAACG
CCTGACATTTGTTGTGCAAGGTTTTGGTAATGTCGGTCTTCATACATGTCGCTATTTGAC
ACGAGCTGGAGCTACATGCATTGGAATCATTGAACATGATGGATCAATTTATAATCCACA
AGGTATTGACCCCAAAGCACTCGAGGATTATAGAATTGAACACGGAACTATTGTTGGCTT
TCCAGGAGCTAAACCATATGAAGGCGAAAGTTTAATGTATGAAGAATGTGACATTTTTGT
ACC
>g3564.t15 Gene=g3564 Length=80
MGTGEREMSWIADTYAKTIGYQDINAHACITGKPINQGGIHGRVSATGRGVFHGLENFIN
EASYMSQIGTTPDICCARFW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3564.t15 | Gene3D | G3DSA:3.40.50.10860 | Leucine Dehydrogenase | 1 | 34 | 0e+00 |
| 4 | g3564.t15 | Gene3D | G3DSA:3.40.50.720 | - | 35 | 74 | 1e-07 |
| 1 | g3564.t15 | PANTHER | PTHR11606 | GLUTAMATE DEHYDROGENASE | 1 | 74 | 0e+00 |
| 2 | g3564.t15 | PANTHER | PTHR11606:SF33 | GLUTAMATE DEHYDROGENASE 1 | 1 | 74 | 0e+00 |
| 3 | g3564.t15 | SUPERFAMILY | SSF53223 | Aminoacid dehydrogenase-like, N-terminal domain | 1 | 40 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
