Gene loci information

Transcript annotation

  • This transcript has been annotated as Endoplasmin-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3606 g3606.t3 TTS g3606.t3 26725832 26725832
chr_3 g3606 g3606.t3 isoform g3606.t3 26726633 26728757
chr_3 g3606 g3606.t3 exon g3606.t3.exon1 26726633 26727799
chr_3 g3606 g3606.t3 cds g3606.t3.CDS1 26726634 26727799
chr_3 g3606 g3606.t3 exon g3606.t3.exon2 26727861 26727983
chr_3 g3606 g3606.t3 cds g3606.t3.CDS2 26727861 26727983
chr_3 g3606 g3606.t3 exon g3606.t3.exon3 26728049 26728283
chr_3 g3606 g3606.t3 cds g3606.t3.CDS3 26728049 26728247
chr_3 g3606 g3606.t3 exon g3606.t3.exon4 26728428 26728757
chr_3 g3606 g3606.t3 TSS g3606.t3 26728851 26728851

Sequences

>g3606.t3 Gene=g3606 Length=1855
ATGAAGTATTTATTAGCCACGACTCTTGGCATAGTACTATTGATTTCTACAGGTAAATAT
CAAATTTGATAAAATCTCGAATTTTCCATTGTCGGCAATTTAAAAATTTGGCTAATTATC
TTACTGTAATGTAATATATTTTATTACTGAATTCATTTAAAAGGCATCCTTGTTAGTGGA
TCAAAAGATCAAGATGGTGTGGACGATGTTAAAATAGATGCTACACTTAAGACATCAACT
GGTACAGATTCGGAAACATTAAAGCGTGAAGAAGAATCAATTAATATTGATGGCTTGAGT
CAGAAAGAACTTAAAGATTTAAGAGACAAGGCTGAAAAACACACTTTCCAAGCTGAAGTT
AATCGAATGATGAAACTTATCATTAATTCACTTTACAAAAATAAAGAAATTTTCTTGCGT
GAATTAATATCCAATGCGAGTGATGCTCTCGATAAAATTCGTTTGATGTCTTTGACAGAC
CGCGCACAATTGGAAACCAATACGGATTTGATTATTCGAGTTAAAACTGATAAGGAAAAT
CGTGTTCTACATATCATTGATACTGGAATCGGAATGACTCACGATGACTTAATCAACAAT
CTTGGTACAATTGCAAAATCTGGAACAGCTGATTTCTTATCGAAGGTACAAGAAAATGAA
AATGGTCAAGATGCTAATGATATGATCGGTCAATTTGGTGTTGGATTTTATTCTGCTTTC
TTGGTCGCCGACAAAGTAGTTGTCACAACAAAACATAATGATGATGAACAATATATTTGG
GAAAGTGATTCTGCCAATTTCAATATTGTAAAAGATCCACGCGGAAGTACACTCAAACGT
GGCTCACAAATCTCATTATATTTGAAAGAAGAGGCTCAAGATTTTTTGGAAGAAGATACT
ATTAAACAATTAATCAAAAAGTATTCACAGTTCATCAATTTCCCAATTTATATGTGGACA
TCAAAAACTGTAGAAGAAGAAGTACCAATTGAAGAAGAAATTGAAAAGAAGGAAGCTGAA
GATGAAACAGATGACGATGAGGCCAAAGTTGAGGAAGAAGCACCTGAAGAAAAAACTCCA
AAAACTAAGAAACAAACTAAAACTGTCTGGGATTGGGAACTTATGAACGATAGTAAACCA
ATTTGGACACGTAAACCCGCTGATGTCACACAAGACGAATACGATGCATTCTATAAAAGT
TTAACTAAAGACACATCGGAACCACTTACACAAACACATTTTGTTGCTGAAGGCGAAGTC
ACATTCAAATCTCTTTTATTTGTACCAAAAATTCAGCCATCTGAAAGTTTCAACAAATAT
GGTTCAAAATCAGATAATATTAAATTATATGTTCGACGTGTTTTCATCACAGATGAATTT
AATGATTTAATGCCCAATTATTTAGGATTCATTCGTGGTGTTGTAGATTCAGATGATTTG
CCATTAAATGTTTCTCGTGAGACTTTACAACAACATAAACTGATTAAAGTCATCAAGAAG
AAATTAGTAAGAAAAGCTCTTGACATGTTGAAAAAATTGGAAGGTGAAGAATATGATAAA
TTCTGGAAAGAATATTCAACAAATATCAAACTTGGAGTAATGGAGGACTCGAGCAATCGC
GCTCGCTTAGCAAAATTATTGAAATTCCAATCATCAAATACAAAGAGTGGAAAATTAACA
TCACTCTCCGACTATTCGAGCCGAATGAAACCAAAGCAAGAATGGATTTATTATATTGCT
GCCGCTTCTCGTGCTGAAGCTGAAAAATCACCTTTCATTGAACGTTTAGTTGCTCGCGGT
TATGAAGTATTATTCTTAGTCGAAGCTGTTGATGAATATTGCATTTCTGCTTTAC

>g3606.t3 Gene=g3606 Length=496
MMKLIINSLYKNKEIFLRELISNASDALDKIRLMSLTDRAQLETNTDLIIRVKTDKENRV
LHIIDTGIGMTHDDLINNLGTIAKSGTADFLSKVQENENGQDANDMIGQFGVGFYSAFLV
ADKVVVTTKHNDDEQYIWESDSANFNIVKDPRGSTLKRGSQISLYLKEEAQDFLEEDTIK
QLIKKYSQFINFPIYMWTSKTVEEEVPIEEEIEKKEAEDETDDDEAKVEEEAPEEKTPKT
KKQTKTVWDWELMNDSKPIWTRKPADVTQDEYDAFYKSLTKDTSEPLTQTHFVAEGEVTF
KSLLFVPKIQPSESFNKYGSKSDNIKLYVRRVFITDEFNDLMPNYLGFIRGVVDSDDLPL
NVSRETLQQHKLIKVIKKKLVRKALDMLKKLEGEEYDKFWKEYSTNIKLGVMEDSSNRAR
LAKLLKFQSSNTKSGKLTSLSDYSSRMKPKQEWIYYIAAASRAEAEKSPFIERLVARGYE
VLFLVEAVDEYCISAL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g3606.t3 CDD cd16927 HATPase_Hsp90-like 1 190 4.70909E-103
14 g3606.t3 Gene3D G3DSA:3.30.565.10 - 1 198 2.3E-103
16 g3606.t3 Gene3D G3DSA:3.30.70.2140 - 199 247 2.3E-103
15 g3606.t3 Gene3D G3DSA:3.30.230.80 - 254 421 6.6E-72
13 g3606.t3 Gene3D G3DSA:3.40.50.11260 - 422 496 1.4E-27
21 g3606.t3 MobiDBLite mobidb-lite consensus disorder prediction 211 243 -
22 g3606.t3 MobiDBLite mobidb-lite consensus disorder prediction 211 230 -
3 g3606.t3 PANTHER PTHR11528:SF96 ENDOPLASMIN 1 496 8.5E-230
4 g3606.t3 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 496 8.5E-230
17 g3606.t3 PIRSF PIRSF002583 HSP90_HTPG 1 496 1.1E-196
5 g3606.t3 PRINTS PR00775 90kDa heat shock protein signature 11 33 3.0E-60
9 g3606.t3 PRINTS PR00775 90kDa heat shock protein signature 60 77 3.0E-60
8 g3606.t3 PRINTS PR00775 90kDa heat shock protein signature 78 95 3.0E-60
7 g3606.t3 PRINTS PR00775 90kDa heat shock protein signature 107 129 3.0E-60
10 g3606.t3 PRINTS PR00775 90kDa heat shock protein signature 158 175 3.0E-60
6 g3606.t3 PRINTS PR00775 90kDa heat shock protein signature 176 194 3.0E-60
2 g3606.t3 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 12 169 9.3E-12
1 g3606.t3 Pfam PF00183 Hsp90 protein 172 496 1.3E-151
20 g3606.t3 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 10 19 -
19 g3606.t3 SMART SM00387 HKATPase_4 12 170 6.5E-4
12 g3606.t3 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2 200 9.54E-63
11 g3606.t3 SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like 256 495 5.69E-85

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values